Factsheet for TraesCS6B01G411300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G237500.1
TraesCS5B01G235200.1
TraesCS5D01G244000.1
TraesCS6A01G142000.1
TraesCS7A01G262600.1
TraesCS7A01G323000.1
TraesCS7B01G160500.1
TraesCS7B01G223900.1
TraesCS7D01G263400.1
TraesCS7D01G319600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36930.1	TraesCS5A01G237500.1	AT3G50330.1	17855426
AT4G36930.1	TraesCS5B01G235200.1	AT3G50330.1	17855426
AT4G36930.1	TraesCS5D01G244000.1	AT3G50330.1	17855426
AT4G36930.1	TraesCS6A01G142000.1	AT3G50330.1	17855426
AT4G36930.1	TraesCS7A01G262600.1	AT3G50330.1	17855426
AT4G36930.1	TraesCS7B01G160500.1	AT3G50330.1	17855426
AT4G36930.1	TraesCS7D01G263400.1	AT3G50330.1	17855426
AT4G36930.1	TraesCS7A01G323000.1	AT5G09750.1	17855426
AT4G36930.1	TraesCS7B01G223900.1	AT5G09750.1	17855426
AT4G36930.1	TraesCS7D01G319600.1	AT5G09750.1	17855426
AT4G36930.1	TraesCS5A01G237500.1	AT5G67060.1	17855426
AT4G36930.1	TraesCS5B01G235200.1	AT5G67060.1	17855426
AT4G36930.1	TraesCS5D01G244000.1	AT5G67060.1	17855426
AT4G36930.1	TraesCS6A01G142000.1	AT5G67060.1	17855426
AT4G36930.1	TraesCS7A01G262600.1	AT5G67060.1	17855426
AT4G36930.1	TraesCS7B01G160500.1	AT5G67060.1	17855426
AT4G36930.1	TraesCS7D01G263400.1	AT5G67060.1	17855426

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G357700.1	Wheat	nucleus	90.76	92.59
HORVU6Hr1G088020.4	Barley	nucleus	87.13	89.19
TraesCS6A01G373500.2	Wheat	nucleus	88.78	88.78
Os02t0805250-00	Rice	nucleus	55.12	59.64
KXG31309	Sorghum	nucleus	55.78	57.88
CDY37185	Canola	mitochondrion	17.16	53.06
Zm00001d018416_P001	Maize	mitochondrion	53.14	48.79
KRH04711	Soybean	plastid	15.51	29.38
KRH04595	Soybean	nucleus	25.08	27.94
KRH28453	Soybean	nucleus	26.73	27.84
TraesCS7B01G026300.1	Wheat	nucleus	31.02	27.73
AT5G67110.1	Thale cress	nucleus	19.14	27.62
KRH05665	Soybean	nucleus	26.4	26.94
CDY24734	Canola	plastid	12.54	26.76
Bra012133.1-P	Field mustard	nucleus, plastid	18.81	26.64
KRH15381	Soybean	nucleus	26.07	26.6
CDY01438	Canola	nucleus, plastid	18.81	26.15
TraesCS2B01G483300.1	Wheat	nucleus	16.17	26.06
CDY12804	Canola	nucleus, plastid	18.48	25.93
KRH77016	Soybean	nucleus	28.05	22.67
PGSC0003DMT400020534	Potato	nucleus	23.43	22.61
CDY44048	Canola	nucleus, plastid	25.08	22.29
Bra010591.1-P	Field mustard	nucleus, plastid	25.08	22.29
VIT_18s0001g10270.t01	Wine grape	nucleus	27.06	22.22
CDY22448	Canola	nucleus, plastid	25.74	22.16
Solyc04g078690.2.1	Tomato	nucleus	22.77	21.97
VIT_07s0031g00450.t01	Wine grape	nucleus, plastid	28.38	21.83
CDX75629	Canola	nucleus	24.75	21.68
CDX69281	Canola	nucleus, plastid	24.75	21.49
Bra011740.1-P	Field mustard	nucleus, plastid	24.75	21.19
Solyc02g093280.2.1	Tomato	nucleus	26.4	21.16
PGSC0003DMT400010253	Potato	nucleus	26.07	21.01
AT4G36930.1	Thale cress	nucleus	25.08	20.38
GSMUA_Achr7P20810_001	Banana	nucleus	36.96	18.7
TraesCS5B01G054800.2	Wheat	nucleus	20.79	18.58
TraesCS2B01G273500.1	Wheat	nucleus	21.12	17.88
TraesCS5B01G445900.1	Wheat	nucleus	14.85	16.01
TraesCS5B01G380200.1	Wheat	nucleus	23.43	15.88
TraesCS6B01G391100.1	Wheat	nucleus	17.49	14.76
TraesCS5B01G422000.1	Wheat	nucleus	19.47	14.39
TraesCS1B01G226200.2	Wheat	nucleus	19.47	12.97
TraesCS5B01G224200.1	Wheat	nucleus	18.15	11.83
TraesCS1B01G100400.2	Wheat	nucleus	18.48	11.16
TraesCS7B01G062100.2	Wheat	nucleus	15.51	9.79

Protein Annotations

EnsemblPlants:TraesCS6B01G411300.1	EnsemblPlantsGene:TraesCS6B01G411300	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF306	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	:	:	:	:

Description

No Description!

Coordinates

chr6B:-:685199165..685202205

Molecular Weight (calculated)

33586.9 Da

IEP (calculated)

7.751

GRAVY (calculated)

-0.707

Length

303 amino acids

Sequence
(BLAST)

001: MMDQEHLDFI MRHQHQGGMG FAPADRGDSE EALGSSESEP AGRPRGKRAR AAEVHNLSEK RRRCKINEKM KALQSLVPDS SKTDKASMLD DAIEYLKHLQ
101: LQVQMLSMRN GVYRPSVNLP GAPDHLPTSQ MCAALNQNSV DASSNRPAAM LPMSHFLGAM SGTRHPFGPP NQDRPRHEPL VLSSVPCTTT REPPFLLGPS
201: QESPLRSLQL TLPAEMIFQE EAMLKHRLSS TQETTSMPVG HEIKQPVRQE TPAERAGHFD ACSIWKNQSH DMTPNNPESV LFAPHFRRFG SGTADSGLRA
301: ESK

Best Arabidopsis Sequence Match ( AT4G36930.1 )
(BLAST)

001: MISQREEREE KKQRVMGDKK LISSSSSSSV YDTRINHHLH HPPSSSDEIS QFLRHIFDRS SPLPSYYSPA TTTTTASLIG VHGSGDPHAD NSRSLVSHHP
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT

Arabidopsis Description

SPTSPT [Source:UniProtKB/TrEMBL;Acc:A0A178UVX7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.