Factsheet for TraesCS5B01G380200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G376500.1	Wheat	nucleus	94.41	86.65
TraesCS5D01G386500.1	Wheat	nucleus	95.3	82.56
HORVU5Hr1G093310.11	Barley	nucleus	91.05	74.41
OQU91282	Sorghum	nucleus	70.25	58.15
Zm00001d033267_P001	Maize	nucleus	69.8	56.93
TraesCS5B01G054800.2	Wheat	nucleus	34.23	45.13
TraesCS2B01G483300.1	Wheat	nucleus	12.53	29.79
GSMUA_Achr6P31370_001	Banana	nucleus	24.61	29.57
GSMUA_Achr6P30080_001	Banana	nucleus	24.61	27.43
TraesCS2B01G273500.1	Wheat	nucleus	21.7	27.09
TraesCS5B01G422000.1	Wheat	nucleus	24.83	27.07
GSMUA_Achr5P02280_001	Banana	nucleus	30.43	25.0
TraesCS6B01G411300.1	Wheat	nucleus	15.88	23.43
GSMUA_Achr4P31770_001	Banana	nucleus	28.86	21.75
TraesCS7B01G026300.1	Wheat	nucleus	15.44	20.35
TraesCS1B01G100400.2	Wheat	nucleus	22.6	20.12
TraesCS5B01G445900.1	Wheat	nucleus	11.19	17.79
TraesCS1B01G226200.2	Wheat	nucleus	17.45	17.14
TraesCS6B01G391100.1	Wheat	nucleus	13.42	16.71
TraesCS5B01G224200.1	Wheat	nucleus	14.09	13.55
TraesCS7B01G062100.2	Wheat	nucleus	12.08	11.25

Protein Annotations

MapMan:15.5.32	MapMan:26.1.1.4	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF194	SMART:SM00353	SUPFAM:SSF47459	EnsemblPlantsGene:TraesCS5B01G380200	EnsemblPlants:TraesCS5B01G380200.1
InterPro:bHLH_dom	TIGR:cd00083	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5B:-:558120561..558122454

Molecular Weight (calculated)

47693.9 Da

IEP (calculated)

6.552

GRAVY (calculated)

-0.582

Length

447 amino acids

Sequence
(BLAST)

001: MSQFVPDWGN MGDISRPLGE DDDLMELLWC NGNVVMQSQG HRKLPPRPEK VPAPPVVQED EAGLWFPFAL ADSLDKDIFQ DLFCEEPPGA AGVDGSSRQQ
101: SMSLADCGDN AGGFQSDLVQ ARAGKAAMEE GASSTLSAMG ASFCGSNQVQ VQGAVSDHGR AGHATAYGDG GAGSALPSAV GSVNANARGR GHEATVASSS
201: GRSNYSFGVT ATTTTTTGTE PTSTSNRSSK SKRGLDTEDS ESPSEDAESE SLVLERKPPQ KLTTARRSRA AEVHNLSERR RRDRINEKMR ALQELIPHCN
301: KTDKASMLDE AIEYLKTLQM QVQMMWMGSG MAPPAVMFPG MQMHQYLPQM GPSMARMPFM APPQQGHGVS LPEQYAHFLG VNPHHHLQPP AHHHQHFAQG
401: LGYYPLGAKA LQQSPALHHV SNGNAGGGTP AATANATPGN AIHPNKR

Best Arabidopsis Sequence Match ( AT2G20180.4 )
(BLAST)

001: MHHFVPDFDT DDDYVNNHNS SLNHLPRKSI TTMGEDDDLM ELLWQNGQVV VQNQRLHTKK PSSSPPKLLP SMDPQQQPSS DQNLFIQEDE MTSWLHYPLR
101: DDDFCSDLLF SAAPTATATA TVSQVTAARP PVSSTNESRP PVRNFMNFSR LRGDFNNGRG GESGPLLSKA VVRESTQVSP SATPSAAASE SGLTRRTDGT
201: DSSAVAGGGA YNRKGKAVAM TAPAIEITGT SSSVVSKSEI EPEKTNVDDR KRKEREATTT DETESRSEET KQARVSTTST KRSRAAEVHN LSERKRRDRI
301: NERMKALQEL IPRCNKSDKA SMLDEAIEYM KSLQLQIQMM SMGCGMMPMM YPGMQQYMPH MAMGMGMNQP IPPPSFMPFP NMLAAQRPLP TQTHMAGSGP
401: QYPVHASDPS RVFVPNQQYD PTSGQPQYPA GYTDPYQQFR GLHPTQPPQF QNQATSYPSS SRVSSSKESE DHGNHTTG

Arabidopsis Description

PIF1Transcription factor PIF1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.