Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P11300_001 | Banana | nucleus | 10.75 | 63.49 |
| GSMUA_Achr6P30080_001 | Banana | nucleus | 39.78 | 36.91 |
| GSMUA_Achr1P16830_001 | Banana | extracellular | 20.7 | 29.96 |
| TraesCS5A01G049600.1 | Wheat | nucleus | 25.27 | 27.98 |
| TraesCS5B01G054800.2 | Wheat | nucleus | 25.27 | 27.73 |
| Os12t0610200-01 | Rice | nucleus | 32.53 | 27.19 |
| HORVU5Hr1G011780.1 | Barley | nucleus | 24.46 | 26.69 |
| TraesCS5D01G060300.1 | Wheat | nucleus | 25.0 | 26.57 |
| GSMUA_Achr5P02280_001 | Banana | nucleus | 38.71 | 26.47 |
| GSMUA_Achr4P31770_001 | Banana | nucleus | 40.59 | 25.46 |
| Zm00001d031044_P001 | Maize | nucleus | 26.61 | 24.81 |
| TraesCS5B01G380200.1 | Wheat | nucleus | 29.57 | 24.61 |
| TraesCS5A01G376500.1 | Wheat | nucleus | 31.72 | 24.23 |
| KXG23955 | Sorghum | nucleus | 30.38 | 23.79 |
| OQU91282 | Sorghum | nucleus | 33.87 | 23.33 |
| TraesCS5D01G386500.1 | Wheat | nucleus | 31.72 | 22.87 |
| Zm00001d033267_P001 | Maize | nucleus | 32.8 | 22.26 |
| GSMUA_Achr10P... | Banana | plastid | 20.43 | 22.16 |
| HORVU5Hr1G093310.11 | Barley | nucleus | 32.26 | 21.94 |
| GSMUA_Achr8P15670_001 | Banana | nucleus | 19.09 | 20.11 |
| GSMUA_Achr5P03100_001 | Banana | nucleus | 13.98 | 18.98 |
| GSMUA_Achr1P19000_001 | Banana | mitochondrion, nucleus | 29.84 | 18.72 |
| GSMUA_Achr5P18390_001 | Banana | nucleus | 30.38 | 18.65 |
| GSMUA_Achr4P21070_001 | Banana | nucleus | 13.71 | 17.0 |
| GSMUA_Achr4P01910_001 | Banana | nucleus | 20.16 | 16.7 |
| GSMUA_Achr10P... | Banana | nucleus | 19.09 | 16.14 |
| GSMUA_Achr9P25560_001 | Banana | nucleus | 13.71 | 14.45 |
| GSMUA_Achr5P16470_001 | Banana | nucleus | 16.94 | 13.85 |
| GSMUA_Achr3P04630_001 | Banana | nucleus | 17.74 | 13.52 |
| GSMUA_Achr7P20810_001 | Banana | nucleus | 21.24 | 13.19 |
| GSMUA_Achr10P... | Banana | nucleus | 13.71 | 12.75 |
| GSMUA_Achr9P18080_001 | Banana | nucleus | 14.52 | 11.13 |
| GSMUA_Achr3P10120_001 | Banana | nucleus | 14.78 | 10.09 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.1.4 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr6G31370_001 |
| EnsemblPlants:GSMUA_Achr6P31370_001 | EnsemblPlants:GSMUA_Achr6T31370_001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M0TBT2 |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF194 | SMART:SM00353 | SUPFAM:SSF47459 |
| TMHMM:TMhelix | UniParc:UPI000296BB51 | InterPro:bHLH_dom | SEG:seg | : | : |
Description
phytochrome-interacting factor 4, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G31370_001]
Coordinates
chr6:-:31190445..31192487
Molecular Weight (calculated)
41319.3 Da
IEP (calculated)
9.101
GRAVY (calculated)
-0.522
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MHSQSQHHPR ASAAIAKLKP EQQQQREQSL GRSISSIQDD ATASWFPSPL HDSLEKEFCS EFFSEMAGID GLGPSNMSTI DRYMGFGDTG ASDVLTAPKK
101: STLHLRENNT MSSSICESNR LHAQGDAAGV AGASVPKHAF ETALASSSGG ACFSFRRTGD QGGSGQCQKR KQRDVQVAEY QSEEAEFESV EAKKAAQGSI
201: STRRSRAAEV HNLSERRRRD RINEKMKALQ ELIPHCNKTD KASMLDEAIE YLKSLQLQVQ MMWMGGRMAQ MMLPGAQQSM PGMAVGVGHA CVPLMHHALQ
301: SSTPNQTLSS TSPAFQAAMF RNLMQKHPQK WIWLIFNFIF RTPAITLMQR IWLFKSQECK ISREQLLQIA PK
101: STLHLRENNT MSSSICESNR LHAQGDAAGV AGASVPKHAF ETALASSSGG ACFSFRRTGD QGGSGQCQKR KQRDVQVAEY QSEEAEFESV EAKKAAQGSI
201: STRRSRAAEV HNLSERRRRD RINEKMKALQ ELIPHCNKTD KASMLDEAIE YLKSLQLQVQ MMWMGGRMAQ MMLPGAQQSM PGMAVGVGHA CVPLMHHALQ
301: SSTPNQTLSS TSPAFQAAMF RNLMQKHPQK WIWLIFNFIF RTPAITLMQR IWLFKSQECK ISREQLLQIA PK
001: MHHFVPDFDT DDDYVNNHNS SLNHLPRKSI TTMGEDDDLM ELLWQNGQVV VQNQRLHTKK PSSSPPKLLP SMDPQQQPSS DQNLFIQEDE MTSWLHYPLR
101: DDDFCSDLLF SAAPTATATA TVSQVTAARP PVSSTNESRP PVRNFMNFSR LRGDFNNGRG GESGPLLSKA VVRESTQVSP SATPSAAASE SGLTRRTDGT
201: DSSAVAGGGA YNRKGKAVAM TAPAIEITGT SSSVVSKSEI EPEKTNVDDR KRKEREATTT DETESRSEET KQARVSTTST KRSRAAEVHN LSERKRRDRI
301: NERMKALQEL IPRCNKSDKA SMLDEAIEYM KSLQLQIQMM SMGCGMMPMM YPGMQQYMPH MAMGMGMNQP IPPPSFMPFP NMLAAQRPLP TQTHMAGSGP
401: QYPVHASDPS RVFVPNQQYD PTSGQPQYPA GYTDPYQQFR GLHPTQPPQF QNQATSYPSS SRVSSSKESE DHGNHTTG
101: DDDFCSDLLF SAAPTATATA TVSQVTAARP PVSSTNESRP PVRNFMNFSR LRGDFNNGRG GESGPLLSKA VVRESTQVSP SATPSAAASE SGLTRRTDGT
201: DSSAVAGGGA YNRKGKAVAM TAPAIEITGT SSSVVSKSEI EPEKTNVDDR KRKEREATTT DETESRSEET KQARVSTTST KRSRAAEVHN LSERKRRDRI
301: NERMKALQEL IPRCNKSDKA SMLDEAIEYM KSLQLQIQMM SMGCGMMPMM YPGMQQYMPH MAMGMGMNQP IPPPSFMPFP NMLAAQRPLP TQTHMAGSGP
401: QYPVHASDPS RVFVPNQQYD PTSGQPQYPA GYTDPYQQFR GLHPTQPPQF QNQATSYPSS SRVSSSKESE DHGNHTTG
Arabidopsis Description
PIF1Transcription factor PIF1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZM7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.