Factsheet for GSMUA_Achr8P15670_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr5P01290_001
GSMUA_Achr6P18580_001
GSMUA_Achr7P23410_001
GSMUA_Achr9P15380_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36930.1	GSMUA_Achr9P15380_001	AT3G50330.1	17855426
AT4G36930.1	GSMUA_Achr11P...	AT5G09750.1	17855426
AT4G36930.1	GSMUA_Achr5P01290_001	AT5G09750.1	17855426
AT4G36930.1	GSMUA_Achr6P18580_001	AT5G09750.1	17855426
AT4G36930.1	GSMUA_Achr7P23410_001	AT5G09750.1	17855426
AT4G36930.1	GSMUA_Achr9P15380_001	AT5G67060.1	17855426

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P11300_001	Banana	nucleus	13.31	74.6
GSMUA_Achr10P...	Banana	plastid	56.66	58.31
CDY37185	Canola	mitochondrion	16.15	58.16
KRH04711	Soybean	plastid	17.0	37.5
KRH04595	Soybean	nucleus	28.61	37.13
KRH28453	Soybean	nucleus	29.75	36.08
AT5G67110.1	Thale cress	nucleus	19.83	33.33
KRH05665	Soybean	nucleus	28.05	33.33
Bra012133.1-P	Field mustard	nucleus, plastid	19.55	32.24
CDY01438	Canola	nucleus, plastid	19.83	32.11
KRH15381	Soybean	nucleus	26.91	31.99
VIT_18s0001g10270.t01	Wine grape	nucleus	33.43	31.98
CDX75629	Canola	nucleus	31.16	31.79
Solyc04g078690.2.1	Tomato	nucleus	28.05	31.53
CDY12804	Canola	nucleus, plastid	19.26	31.48
VIT_07s0031g00450.t01	Wine grape	nucleus, plastid	35.13	31.47
CDY44048	Canola	nucleus, plastid	30.31	31.38
Bra010591.1-P	Field mustard	nucleus, plastid	30.31	31.38
PGSC0003DMT400020534	Potato	nucleus	27.76	31.21
Bra011740.1-P	Field mustard	nucleus, plastid	31.16	31.07
CDY24734	Canola	plastid	12.46	30.99
CDY22448	Canola	nucleus, plastid	30.88	30.97
CDX69281	Canola	nucleus, plastid	30.59	30.95
KRH77016	Soybean	nucleus	32.58	30.67
AT4G36930.1	Thale cress	nucleus	31.16	29.49
Solyc02g093280.2.1	Tomato	nucleus	31.44	29.37
PGSC0003DMT400010253	Potato	nucleus	30.88	28.99
GSMUA_Achr1P16830_001	Banana	extracellular	16.15	22.18
GSMUA_Achr6P31370_001	Banana	nucleus	20.11	19.09
GSMUA_Achr6P30080_001	Banana	nucleus	18.98	16.71
GSMUA_Achr7P20810_001	Banana	nucleus	26.35	15.53
GSMUA_Achr5P03100_001	Banana	nucleus	11.9	15.33
GSMUA_Achr5P02280_001	Banana	nucleus	22.1	14.34
GSMUA_Achr1P19000_001	Banana	mitochondrion, nucleus	23.8	14.17
GSMUA_Achr4P21070_001	Banana	nucleus	11.9	14.0
GSMUA_Achr10P...	Banana	nucleus	15.3	13.5
GSMUA_Achr10P...	Banana	nucleus	16.15	12.95
GSMUA_Achr5P18390_001	Banana	nucleus	21.81	12.71
GSMUA_Achr4P31770_001	Banana	nucleus	21.25	12.65
GSMUA_Achr9P25560_001	Banana	nucleus	12.18	12.18
GSMUA_Achr4P01910_001	Banana	nucleus	15.3	12.03
GSMUA_Achr5P16470_001	Banana	nucleus	14.45	11.21
GSMUA_Achr3P04630_001	Banana	nucleus	15.3	11.07
GSMUA_Achr9P18080_001	Banana	nucleus	14.45	10.52
GSMUA_Achr3P10120_001	Banana	nucleus	13.6	8.81

Protein Annotations

EnsemblPlants:GSMUA_Achr8P15670_001	EnsemblPlants:GSMUA_Achr8T15670_001	EnsemblPlantsGene:GSMUA_Achr8G15670_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF306	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI00029517E5	UniProt:M0TQS0	MapMan:15.5.32	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G15670_001]

Coordinates

chr8:-:13287127..13289926

Molecular Weight (calculated)

38921.7 Da

IEP (calculated)

6.577

GRAVY (calculated)

-0.452

Length

353 amino acids

Sequence
(BLAST)

001: MDDHSRTRYG CGSSYTSFQG DQEKISCSSA CVVGSFSRDA EQMPSSSSYP ISAGGDGGSS GKESQDHDFD SLDCESEEGV EAFEEPAKPV PRRSSGSKRS
101: RAAAVHNMSE KRRRSRINEK MRALQNLIPN SNKTDKASML DEAIEYLKQL QLQVQINEIC QACQFHKLLL TKSAELHKSC IENNGSKESQ DSSRRENGTV
201: RIESWKPYIS VEFPSSSIVL IFLQILSMRN GLNLHSMYLS GALQPLQTSQ MCIGFGLNSD MAMNTGTGLL PLNQDSAAQI SFDLSNRWTS SLQSTIEASV
301: FNVTKPEASL FASSHSHHAS FQVPVSCEVE FLLHRNKVIL KNDSIMHICG VLT

Best Arabidopsis Sequence Match ( AT4G36930.1 )
(BLAST)

001: MISQREEREE KKQRVMGDKK LISSSSSSSV YDTRINHHLH HPPSSSDEIS QFLRHIFDRS SPLPSYYSPA TTTTTASLIG VHGSGDPHAD NSRSLVSHHP
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT

Arabidopsis Description

SPTSPT [Source:UniProtKB/TrEMBL;Acc:A0A178UVX7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.