Factsheet for GSMUA_Achr4P01910_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P04630_001	Banana	nucleus	73.05	67.21
GSMUA_Achr10P...	Banana	nucleus	55.46	56.59
GSMUA_Achr5P16470_001	Banana	nucleus	55.46	54.73
PGSC0003DMT400020244	Potato	nucleus	45.66	53.66
GSMUA_Achr10P...	Banana	nucleus	47.22	53.0
Solyc12g010170.1.1	Tomato	nucleus	44.99	52.2
GSMUA_Achr9P11300_001	Banana	nucleus	7.13	50.79
KRH12909	Soybean	nucleus	52.56	49.68
PGSC0003DMT400028917	Potato	nucleus	49.0	49.55
KRH37912	Soybean	nucleus	53.9	49.39
Solyc07g005400.2.1	Tomato	nucleus	47.66	48.64
GSMUA_Achr5P03100_001	Banana	nucleus	29.18	47.81
VIT_11s0037g00040.t01	Wine grape	nucleus	53.23	47.42
GSMUA_Achr4P21070_001	Banana	nucleus	29.62	44.33
GSMUA_Achr9P25560_001	Banana	nucleus	30.07	38.24
GSMUA_Achr9P18080_001	Banana	nucleus	29.18	27.01
GSMUA_Achr3P10120_001	Banana	nucleus	30.96	25.5
GSMUA_Achr6P31370_001	Banana	nucleus	16.7	20.16
GSMUA_Achr1P16830_001	Banana	extracellular	11.14	19.46
GSMUA_Achr6P30080_001	Banana	nucleus	14.92	16.71
GSMUA_Achr10P...	Banana	plastid	11.8	15.45
GSMUA_Achr8P15670_001	Banana	nucleus	12.03	15.3
GSMUA_Achr5P18390_001	Banana	nucleus	17.82	13.2
GSMUA_Achr5P02280_001	Banana	nucleus	15.81	13.05
GSMUA_Achr4P31770_001	Banana	nucleus	17.15	12.98
GSMUA_Achr1P19000_001	Banana	mitochondrion, nucleus	16.04	12.14
GSMUA_Achr7P20810_001	Banana	nucleus	13.81	10.35

Protein Annotations

EnsemblPlants:GSMUA_Achr4P01910_001	EnsemblPlants:GSMUA_Achr4T01910_001	EnsemblPlantsGene:GSMUA_Achr4G01910_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR16223	PANTHER:PTHR16223:SF28	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002967AFF	UniProt:M0SKA8	MapMan:15.5.32	:	:

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G01910_001]

Coordinates

chr4:-:1687467..1690570

Molecular Weight (calculated)

45743.9 Da

IEP (calculated)

6.376

GRAVY (calculated)

-0.276

Length

449 amino acids

Sequence
(BLAST)

001: MQPSNREMPG MASSLNGISH TSAAAAAHVA LRELQNGHGL QAPFDHAGGG VGHDDFLDQM LSNLPSAWAE LGNPRPAWVP PSDAPTAGQR LFSAGRAGES
101: AEEMQYDESL LLANRLRQHQ ISGGSSPTGE ALMLQLSRSG QQQMLSGLLP LPLTLGSAGS ADSPNPTGGD GLYNGFGGSL QLAESVNQQS FHHPQSAPMP
201: GQNFGAAPPA AGAGQTPAAS TLASASAGGG SGPPRQRVRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNANKTDKA SMLDEIIDYV KFLQLQVKAN
301: SSLPPFPLVL SMSRLGGAAA VAPLVADMAS EGQSGAGRDG ANGGAAGSSD SLTVTEHQVA KMMEEDMGSA MQYLQGKGLC LMPISLASAI SSATAGHLGH
401: GLVPGVLPPP NPSGDAPSSP GVSALTAQST MAAEATKDGV AASKSLSSK

Best Arabidopsis Sequence Match ( AT2G24260.2 )
(BLAST)

001: MNQQGQTQTQ TQPQASASTA TGGTVAAPPQ SRTKIRARRG QATDPHSIAE RLRRERIAER MKALQELVPN GNKTDKASML DEIIDYVKFL QLQVKVLSMS
101: RLGGAASVSS QISEAGGSHG NASSAMVGGS QTAGNSNDSV TMTEHQVAKL MEEDMGSAMQ YLQGKGLCLM PISLATAIST ATCHSRNPLI PGAVADVGGP
201: SPPNLSGMTI QSTSTKMGSG NGKLNGNGVT ERSSSIAVKE AVSVSKA

Arabidopsis Description

BHLH66Transcription factor bHLH66 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.