Factsheet for GSMUA_Achr7P20810_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr5P01290_001
GSMUA_Achr6P18580_001
GSMUA_Achr7P23410_001
GSMUA_Achr9P15380_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36930.1	GSMUA_Achr9P15380_001	AT3G50330.1	17855426
AT4G36930.1	GSMUA_Achr11P...	AT5G09750.1	17855426
AT4G36930.1	GSMUA_Achr5P01290_001	AT5G09750.1	17855426
AT4G36930.1	GSMUA_Achr6P18580_001	AT5G09750.1	17855426
AT4G36930.1	GSMUA_Achr7P23410_001	AT5G09750.1	17855426
AT4G36930.1	GSMUA_Achr9P15380_001	AT5G67060.1	17855426

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P11300_001	Banana	nucleus	7.35	69.84
CDY37185	Canola	mitochondrion	9.35	57.14
TraesCS6A01G190600.1	Wheat	nucleus	9.85	45.74
KXG31309	Sorghum	nucleus	20.03	41.1
Os02t0805250-00	Rice	nucleus	19.2	41.07
HORVU6Hr1G088020.4	Barley	nucleus	19.53	39.53
TraesCS6A01G373500.2	Wheat	nucleus	19.53	38.61
TraesCS6D01G357700.1	Wheat	nucleus	19.03	38.38
TraesCS6B01G411300.1	Wheat	nucleus	18.7	36.96
KRH04711	Soybean	plastid	9.85	36.88
Zm00001d018416_P001	Maize	mitochondrion	19.53	35.45
KRH04595	Soybean	nucleus	15.19	33.46
Os06t0164400-01	Rice	cytosol, mitochondrion, nucleus	10.85	32.99
CDY24734	Canola	plastid	7.68	32.39
OQU75890	Sorghum	nucleus	15.36	31.62
AT5G67110.1	Thale cress	nucleus	11.02	31.43
CDY12804	Canola	nucleus, plastid	11.19	31.02
Bra012133.1-P	Field mustard	nucleus, plastid	11.02	30.84
CDY01438	Canola	nucleus, plastid	11.19	30.73
KRH05665	Soybean	nucleus	14.86	29.97
KRH28453	Soybean	nucleus	14.36	29.55
KRH15381	Soybean	nucleus	14.52	29.29
TraesCS7A01G126900.1	Wheat	nucleus	15.69	28.4
GSMUA_Achr10P...	Banana	plastid	16.19	28.28
Zm00001d045212_P001	Maize	nucleus	15.86	28.02
TraesCS7B01G026300.1	Wheat	nucleus	15.86	28.02
TraesCS7D01G124700.1	Wheat	nucleus	15.69	27.81
GSMUA_Achr1P16830_001	Banana	extracellular	11.85	27.63
HORVU7Hr1G026560.2	Barley	nucleus	15.53	27.51
VIT_07s0031g00450.t01	Wine grape	nucleus, plastid	17.86	27.16
VIT_18s0001g10270.t01	Wine grape	nucleus	16.53	26.83
Solyc04g078690.2.1	Tomato	nucleus	13.86	26.43
GSMUA_Achr8P15670_001	Banana	nucleus	15.53	26.35
KRH77016	Soybean	nucleus	16.36	26.13
CDX75629	Canola	nucleus	15.03	26.01
Solyc02g093280.2.1	Tomato	nucleus	16.36	25.93
PGSC0003DMT400020534	Potato	nucleus	13.52	25.8
PGSC0003DMT400010253	Potato	nucleus	16.03	25.53
CDY44048	Canola	nucleus, plastid	14.52	25.51
Bra010591.1-P	Field mustard	nucleus, plastid	14.52	25.51
CDX69281	Canola	nucleus, plastid	14.86	25.5
Bra011740.1-P	Field mustard	nucleus, plastid	15.03	25.42
CDY22448	Canola	nucleus, plastid	14.86	25.28
AT4G36930.1	Thale cress	nucleus	15.36	24.66
GSMUA_Achr6P31370_001	Banana	nucleus	13.19	21.24
GSMUA_Achr6P30080_001	Banana	nucleus	12.69	18.95
GSMUA_Achr5P03100_001	Banana	nucleus	7.68	16.79
GSMUA_Achr4P31770_001	Banana	nucleus	15.69	15.85
GSMUA_Achr4P21070_001	Banana	nucleus	7.85	15.67
GSMUA_Achr5P02280_001	Banana	nucleus	13.52	14.89
GSMUA_Achr5P18390_001	Banana	nucleus	14.69	14.52
GSMUA_Achr10P...	Banana	nucleus	9.52	14.25
GSMUA_Achr4P01910_001	Banana	nucleus	10.35	13.81
GSMUA_Achr10P...	Banana	nucleus	10.02	13.64
GSMUA_Achr9P25560_001	Banana	nucleus	8.01	13.6
GSMUA_Achr5P16470_001	Banana	nucleus	10.18	13.41
GSMUA_Achr1P19000_001	Banana	mitochondrion, nucleus	13.19	13.32
GSMUA_Achr3P04630_001	Banana	nucleus	10.52	12.91
GSMUA_Achr9P18080_001	Banana	nucleus	9.68	11.96
GSMUA_Achr3P10120_001	Banana	nucleus	9.18	10.09

Protein Annotations

EnsemblPlants:GSMUA_Achr7P20810_001	EnsemblPlants:GSMUA_Achr7T20810_001	EnsemblPlantsGene:GSMUA_Achr7G20810_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR12565	PANTHER:PTHR12565:SF306	PFAM:PF00010	PFscan:PS50888	SEG:seg
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00029522F2	UniProt:M0TJB8	MapMan:15.5.32	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G20810_001]

Coordinates

chr7:-:23794844..23804751

Molecular Weight (calculated)

67050.9 Da

IEP (calculated)

9.965

GRAVY (calculated)

-0.579

Length

599 amino acids

Sequence
(BLAST)

001: MDVLRFIGLI KVVLEFQCFE HLMREGRESN RGNLFLLISP SRSFRWFRIF WRVMDAHSRS LCSGSSGHAY YQGNQDQISF LLGHLSPTCS SYPSSDFPLA
101: GAEDGFGAVG SSLLHSRMKS PDQDLDSLDC EIEVSEEPPK LAPARTSSSK RNRAAEVHNL SEKRRRSRIN EKMKALQSLI PNSSKVTDKA SMLDEAIEYL
201: KQLQLQVQML SMRNSLSQHP MFLSGGLQPL QALPMGIDFG LGANRAVNAV GMLPLNQVSS VPNTFDLSPS SNQSASIPSV INITKPETPV AMEPSQSHHG
301: SFLLPVSIEE ILTQEMITQQ QPDTRHSPRN LTGESSKTPP RFFNIENEVN SMAADAAQHP GGQASSSVGA DHVAECMLGR VRLQDEPSEK EEFIQHLLLS
401: LARSPRPIPG GREEQDQHRR REKWRRRARM ESRAGIRKWA TKACFRATPS TNTCWRRACA LGSLSARRSS GRSRPSIHGA SMFLHYDLPQ ASNHNLQCSS
501: VRRRHVQRRL IYLHLPHTPE LIPGLSGLIS LFRDLECDQP PSPSLRLVND SKHRKGEREE QPGTRKRTTK DTSFPVLSFI TGGHAGRRLK ETTEHREIG

Best Arabidopsis Sequence Match ( AT4G36930.1 )
(BLAST)

001: MISQREEREE KKQRVMGDKK LISSSSSSSV YDTRINHHLH HPPSSSDEIS QFLRHIFDRS SPLPSYYSPA TTTTTASLIG VHGSGDPHAD NSRSLVSHHP
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT

Arabidopsis Description

SPTSPT [Source:UniProtKB/TrEMBL;Acc:A0A178UVX7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.