Factsheet for TraesCS6A01G373500.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G237500.1
TraesCS5B01G235200.1
TraesCS5D01G244000.1
TraesCS6A01G142000.1
TraesCS7A01G262600.1
TraesCS7A01G323000.1
TraesCS7B01G160500.1
TraesCS7B01G223900.1
TraesCS7D01G263400.1
TraesCS7D01G319600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36930.1	TraesCS5A01G237500.1	AT3G50330.1	17855426
AT4G36930.1	TraesCS5B01G235200.1	AT3G50330.1	17855426
AT4G36930.1	TraesCS5D01G244000.1	AT3G50330.1	17855426
AT4G36930.1	TraesCS6A01G142000.1	AT3G50330.1	17855426
AT4G36930.1	TraesCS7A01G262600.1	AT3G50330.1	17855426
AT4G36930.1	TraesCS7B01G160500.1	AT3G50330.1	17855426
AT4G36930.1	TraesCS7D01G263400.1	AT3G50330.1	17855426
AT4G36930.1	TraesCS7A01G323000.1	AT5G09750.1	17855426
AT4G36930.1	TraesCS7B01G223900.1	AT5G09750.1	17855426
AT4G36930.1	TraesCS7D01G319600.1	AT5G09750.1	17855426
AT4G36930.1	TraesCS5A01G237500.1	AT5G67060.1	17855426
AT4G36930.1	TraesCS5B01G235200.1	AT5G67060.1	17855426
AT4G36930.1	TraesCS5D01G244000.1	AT5G67060.1	17855426
AT4G36930.1	TraesCS6A01G142000.1	AT5G67060.1	17855426
AT4G36930.1	TraesCS7A01G262600.1	AT5G67060.1	17855426
AT4G36930.1	TraesCS7B01G160500.1	AT5G67060.1	17855426
AT4G36930.1	TraesCS7D01G263400.1	AT5G67060.1	17855426

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G357700.1	Wheat	nucleus	88.78	90.57
HORVU6Hr1G088020.4	Barley	nucleus	87.13	89.19
TraesCS6B01G411300.1	Wheat	nucleus	88.78	88.78
Os02t0805250-00	Rice	nucleus	56.44	61.07
KXG31309	Sorghum	nucleus	56.44	58.56
CDY37185	Canola	mitochondrion	17.49	54.08
Zm00001d018416_P001	Maize	mitochondrion	52.81	48.48
TraesCS6A01G190600.1	Wheat	nucleus	17.82	41.86
KRH04711	Soybean	plastid	16.5	31.25
KRH04595	Soybean	nucleus	25.08	27.94
KRH28453	Soybean	nucleus	26.73	27.84
AT5G67110.1	Thale cress	nucleus	19.14	27.62
TraesCS7A01G126900.1	Wheat	nucleus	30.03	27.49
CDY24734	Canola	plastid	12.87	27.46
KRH05665	Soybean	nucleus	26.4	26.94
Bra012133.1-P	Field mustard	nucleus, plastid	18.81	26.64
KRH15381	Soybean	nucleus	26.07	26.6
TraesCS2A01G461700.2	Wheat	nucleus	16.5	26.6
CDY01438	Canola	nucleus, plastid	18.81	26.15
CDY12804	Canola	nucleus, plastid	18.48	25.93
PGSC0003DMT400020534	Potato	nucleus	24.42	23.57
CDY44048	Canola	nucleus, plastid	26.07	23.17
Bra010591.1-P	Field mustard	nucleus, plastid	26.07	23.17
VIT_18s0001g10270.t01	Wine grape	nucleus	28.05	23.04
CDY22448	Canola	nucleus, plastid	26.73	23.01
Solyc04g078690.2.1	Tomato	nucleus	23.76	22.93
CDX69281	Canola	nucleus, plastid	26.4	22.92
KRH77016	Soybean	nucleus	28.05	22.67
VIT_07s0031g00450.t01	Wine grape	nucleus, plastid	29.37	22.59
Bra011740.1-P	Field mustard	nucleus, plastid	26.07	22.32
CDX75629	Canola	nucleus	25.41	22.25
AT4G36930.1	Thale cress	nucleus	26.4	21.45
Solyc02g093280.2.1	Tomato	nucleus	26.73	21.43
PGSC0003DMT400010253	Potato	nucleus	26.4	21.28
GSMUA_Achr7P20810_001	Banana	nucleus	38.61	19.53
TraesCS5A01G049600.1	Wheat	nucleus	20.79	18.75
TraesCS2A01G253900.2	Wheat	nucleus	21.45	18.16
TraesCS5A01G441900.1	Wheat	nucleus	14.85	16.01
TraesCS5A01G376500.1	Wheat	nucleus	24.42	15.2
TraesCS6A01G358400.3	Wheat	nucleus	18.15	14.18
TraesCS5A01G420200.1	Wheat	nucleus	19.14	13.81
TraesCS7A01G147500.1	Wheat	nucleus	17.82	13.57
TraesCS1A01G212700.1	Wheat	nucleus	19.47	12.97
TraesCS5A01G225700.1	Wheat	nucleus	18.48	12.23
TraesCS1A01G083000.1	Wheat	nucleus	18.81	11.24
TraesCS7A01G157700.1	Wheat	nucleus	15.51	9.79

Protein Annotations

EnsemblPlants:TraesCS6A01G373500.2	EnsemblPlantsGene:TraesCS6A01G373500	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF306	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	:	:	:	:

Description

No Description!

Coordinates

chr6A:-:596747904..596750442

Molecular Weight (calculated)

33655.1 Da

IEP (calculated)

7.707

GRAVY (calculated)

-0.653

Length

303 amino acids

Sequence
(BLAST)

001: MMDQEHLDFI MRRHHHQGGM GFVPADRGDS EEALGSSESE PAGRPRGKRA RAAEVHNLSE KRRRCKINEK MKALQSLVPN SSKTDKASML DDAIEYLKHL
101: QLQVQMLSMR NGMYRPSVNL PGAAGHLPTS QMCAALNQNS VDASSNPPAA MLPMNHFLGA MSGARPSFDH PNQDRPRHEP LVLSSVPCTT TREPPFLLGP
201: SQESPLRSLQ LTLPAEMIFQ EEAMLKHWLC STQETASVPA GHEMKPVRQE TPAARAGHFD TCSIWKNQPQ DMVPNNTESI LFVPHLQRFQ NSNADSGLRA
301: ESK

Best Arabidopsis Sequence Match ( AT4G36930.1 )
(BLAST)

001: MISQREEREE KKQRVMGDKK LISSSSSSSV YDTRINHHLH HPPSSSDEIS QFLRHIFDRS SPLPSYYSPA TTTTTASLIG VHGSGDPHAD NSRSLVSHHP
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT

Arabidopsis Description

SPTSPT [Source:UniProtKB/TrEMBL;Acc:A0A178UVX7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.