Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G215600.2 | Wheat | nucleus | 95.82 | 95.82 |
| TraesCS1B01G226200.2 | Wheat | nucleus | 94.51 | 94.51 |
| HORVU1Hr1G054260.3 | Barley | nucleus | 94.07 | 92.24 |
| Os10t0556200-01 | Rice | nucleus | 65.93 | 64.52 |
| Zm00001d029898_P001 | Maize | nucleus | 68.13 | 63.27 |
| OQU92150 | Sorghum | nucleus | 71.43 | 60.52 |
| CDY65390 | Canola | nucleus | 18.9 | 41.15 |
| Bra037312.1-P | Field mustard | nucleus | 18.9 | 41.15 |
| CDX83214 | Canola | nucleus | 30.33 | 39.66 |
| CDX91917 | Canola | nucleus | 29.89 | 39.19 |
| CDX74328 | Canola | nucleus | 32.75 | 38.5 |
| AT4G00050.1 | Thale cress | nucleus | 33.63 | 38.35 |
| Bra000560.1-P | Field mustard | nucleus | 32.53 | 38.14 |
| CDY21498 | Canola | nucleus | 32.31 | 37.98 |
| VIT_15s0021g02690.t01 | Wine grape | nucleus | 37.8 | 36.99 |
| KRH75301 | Soybean | nucleus | 35.16 | 34.93 |
| KRG88937 | Soybean | nucleus | 35.6 | 34.84 |
| Solyc01g090790.2.1 | Tomato | nucleus | 35.38 | 34.7 |
| PGSC0003DMT400066807 | Potato | nucleus | 34.95 | 34.27 |
| TraesCS6A01G190600.1 | Wheat | nucleus | 9.67 | 34.11 |
| Solyc10g018510.1.1 | Tomato | nucleus | 25.27 | 29.41 |
| TraesCS2A01G461700.2 | Wheat | nucleus | 9.89 | 23.94 |
| TraesCS5A01G049600.1 | Wheat | nucleus | 14.51 | 19.64 |
| TraesCS6A01G373500.2 | Wheat | nucleus | 12.97 | 19.47 |
| TraesCS2A01G253900.2 | Wheat | nucleus | 15.16 | 19.27 |
| TraesCS7A01G126900.1 | Wheat | nucleus | 13.63 | 18.73 |
| TraesCS5A01G420200.1 | Wheat | nucleus | 15.82 | 17.14 |
| TraesCS5A01G376500.1 | Wheat | nucleus | 17.58 | 16.43 |
| TraesCS5A01G441900.1 | Wheat | nucleus | 9.45 | 15.3 |
| TraesCS1A01G083000.1 | Wheat | nucleus | 16.48 | 14.79 |
| TraesCS7A01G147500.1 | Wheat | nucleus | 12.09 | 13.82 |
| TraesCS6A01G358400.3 | Wheat | nucleus | 11.65 | 13.66 |
| TraesCS5A01G225700.1 | Wheat | nucleus | 12.31 | 12.23 |
| TraesCS7A01G157700.1 | Wheat | nucleus | 10.11 | 9.58 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009506 | GO:GO:0009567 | GO:GO:0046983 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF173 | SMART:SM00353 | SUPFAM:SSF47459 | EnsemblPlantsGene:TraesCS1A01G212700 | EnsemblPlants:TraesCS1A01G212700.1 | InterPro:bHLH_dom |
| TIGR:cd00083 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:375471248..375477394
Molecular Weight (calculated)
48424.6 Da
IEP (calculated)
6.179
GRAVY (calculated)
-0.468
Length
455 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNQCVPSWD LDETVSAGLN PVSAGSTQRM APGDSGLTGP VAMPMPDQYD EVAELTWEKG NIFWQGLLNR SVPKYPAAPP PAQMHAIGGA GDHRETLEAV
101: VGEAAARLSS QSTSHLGQPL PAAAAPWLGV GAPADGLVPC ARVDEPAEGD VRRKRARVVG EDGRVCASQG SVAPGRGESS LLTLEPCGTG ADDLCGFTTT
201: NNSTSLDHGS PETENTSFGG GASDSRCFSR RSQRDGLCDE AENVVIKGEA PMRSSISTKR SRAAAIHNES ERKRRDRINQ KMQTLQKLVP NSSKTDKASM
301: LDEVIDHLKE LQATVQMMNR MSSMMMPMAM PQLAQMSVMA NMAQMAQMAQ MGLGMINMAG PLAQPAYPGL TQPMMHTSTP FVTMQPWNAG AGADRQKQPA
401: AAAVPDAYSA FLACQAAQQN AQQQAQPNGM EAYSRMMAMC QKLSQQQTKP GSSKE
101: VGEAAARLSS QSTSHLGQPL PAAAAPWLGV GAPADGLVPC ARVDEPAEGD VRRKRARVVG EDGRVCASQG SVAPGRGESS LLTLEPCGTG ADDLCGFTTT
201: NNSTSLDHGS PETENTSFGG GASDSRCFSR RSQRDGLCDE AENVVIKGEA PMRSSISTKR SRAAAIHNES ERKRRDRINQ KMQTLQKLVP NSSKTDKASM
301: LDEVIDHLKE LQATVQMMNR MSSMMMPMAM PQLAQMSVMA NMAQMAQMAQ MGLGMINMAG PLAQPAYPGL TQPMMHTSTP FVTMQPWNAG AGADRQKQPA
401: AAAVPDAYSA FLACQAAQQN AQQQAQPNGM EAYSRMMAMC QKLSQQQTKP GSSKE
001: MSQCVPNCHI DDTPAAATTT VRSTTAADIP ILDYEVAELT WENGQLGLHG LGPPRVTASS TKYSTGAGGT LESIVDQATR LPNPKPTDEL VPWFHHRSSR
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK
Arabidopsis Description
UNE10Transcription factor UNE10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ38]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.