Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G00050.1 | CDY22597 | AT1G32230.1 | 19548978 |
| AT4G00050.1 | CDY41739 | AT1G32230.1 | 19548978 |
| AT4G00050.1 | CDY43007 | AT1G32230.1 | 19548978 |
| AT4G00050.1 | CDY60257 | AT1G32230.1 | 19548978 |
| AT4G00050.1 | CDY67026 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74328 | Canola | nucleus | 95.61 | 95.61 |
| Bra000560.1-P | Field mustard | nucleus | 95.61 | 95.36 |
| CDX83214 | Canola | nucleus | 83.46 | 92.82 |
| CDX91917 | Canola | nucleus | 82.69 | 92.22 |
| AT4G00050.1 | Thale cress | nucleus | 81.14 | 78.7 |
| CDY65390 | Canola | nucleus | 42.12 | 77.99 |
| VIT_15s0021g02690.t01 | Wine grape | nucleus | 57.11 | 47.53 |
| KRH75301 | Soybean | nucleus | 55.04 | 46.51 |
| KRG88937 | Soybean | nucleus | 55.3 | 46.02 |
| CDY37185 | Canola | mitochondrion | 11.63 | 45.92 |
| PGSC0003DMT400066807 | Potato | nucleus | 52.71 | 43.97 |
| Solyc10g018510.1.1 | Tomato | nucleus | 40.57 | 40.15 |
| TraesCS1B01G226200.2 | Wheat | nucleus | 39.02 | 33.19 |
| HORVU1Hr1G054260.3 | Barley | nucleus | 39.53 | 32.97 |
| TraesCS1D01G215600.2 | Wheat | nucleus | 38.5 | 32.75 |
| Os10t0556200-01 | Rice | nucleus | 39.28 | 32.69 |
| TraesCS1A01G212700.1 | Wheat | nucleus | 37.98 | 32.31 |
| Zm00001d029898_P001 | Maize | nucleus | 40.57 | 32.04 |
| OQU92150 | Sorghum | nucleus | 42.64 | 30.73 |
| CDY24734 | Canola | plastid | 9.56 | 26.06 |
| CDY35224 | Canola | nucleus | 15.5 | 23.17 |
| CDY12804 | Canola | nucleus, plastid | 12.92 | 23.15 |
| CDY01438 | Canola | nucleus, plastid | 12.92 | 22.94 |
| CDY67566 | Canola | nucleus, plastid | 15.5 | 21.9 |
| CDY00603 | Canola | nucleus, plastid | 15.5 | 21.9 |
| CDY44048 | Canola | nucleus, plastid | 18.35 | 20.82 |
| CDX75629 | Canola | nucleus | 18.09 | 20.23 |
| CDY22448 | Canola | nucleus, plastid | 18.35 | 20.17 |
| CDX69281 | Canola | nucleus, plastid | 17.83 | 19.77 |
| CDY20289 | Canola | nucleus | 10.34 | 18.96 |
| CDY31989 | Canola | nucleus | 23.26 | 18.91 |
| CDY65446 | Canola | nucleus | 16.02 | 18.73 |
| CDY55014 | Canola | nucleus | 13.95 | 18.69 |
| CDX67873 | Canola | nucleus | 14.73 | 18.57 |
| CDY05725 | Canola | nucleus | 24.29 | 18.54 |
| CDY11836 | Canola | nucleus | 13.7 | 18.53 |
| CDY66254 | Canola | nucleus | 19.12 | 18.5 |
| CDX80064 | Canola | nucleus | 19.12 | 18.5 |
| CDY50911 | Canola | nucleus | 12.92 | 18.45 |
| CDY29961 | Canola | nucleus | 19.38 | 18.43 |
| CDX70453 | Canola | nucleus | 19.38 | 18.43 |
| CDY14866 | Canola | nucleus | 19.12 | 18.36 |
| CDY30375 | Canola | nucleus | 19.12 | 18.23 |
| CDX83349 | Canola | nucleus | 18.86 | 18.07 |
| CDY02785 | Canola | nucleus | 13.7 | 17.91 |
| CDY62262 | Canola | nucleus | 13.95 | 17.88 |
| CDY06865 | Canola | nucleus | 16.54 | 17.83 |
| CDY06870 | Canola | nucleus | 20.93 | 17.8 |
| CDY32733 | Canola | nucleus | 13.7 | 17.55 |
| CDX83509 | Canola | nucleus | 18.6 | 17.43 |
| CDX88653 | Canola | nucleus | 13.44 | 17.33 |
| CDY11401 | Canola | extracellular | 15.76 | 17.33 |
| CDX76616 | Canola | extracellular | 16.02 | 17.32 |
| CDY42809 | Canola | nucleus | 18.35 | 17.15 |
| CDY06026 | Canola | nucleus | 18.86 | 16.52 |
| CDX71916 | Canola | nucleus | 18.86 | 16.48 |
| CDX94963 | Canola | nucleus | 21.19 | 16.47 |
| CDY06358 | Canola | nucleus | 20.41 | 16.09 |
| CDY22636 | Canola | nucleus | 20.16 | 15.89 |
| CDY64745 | Canola | nucleus | 20.41 | 15.74 |
| CDX68710 | Canola | nucleus | 13.18 | 15.6 |
| CDY28232 | Canola | nucleus | 13.18 | 15.6 |
| CDY06867 | Canola | nucleus | 18.86 | 15.15 |
| CDY34780 | Canola | nucleus | 12.92 | 14.79 |
| CDX76819 | Canola | nucleus | 12.92 | 14.71 |
| CDY35220 | Canola | nucleus | 13.95 | 14.56 |
| CDY21898 | Canola | nucleus | 11.11 | 14.29 |
| CDY22062 | Canola | nucleus | 11.11 | 14.14 |
| CDY46133 | Canola | nucleus | 6.98 | 14.14 |
| CDX91293 | Canola | nucleus | 10.85 | 14.09 |
| CDX89919 | Canola | nucleus | 11.11 | 13.83 |
| CDY18011 | Canola | nucleus | 10.85 | 13.82 |
| CDY18143 | Canola | nucleus | 10.85 | 13.73 |
| CDX97278 | Canola | nucleus | 10.34 | 13.38 |
| CDX90930 | Canola | nucleus | 10.59 | 13.23 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 6.72 | 12.81 |
| CDY35222 | Canola | nucleus | 18.86 | 12.65 |
| CDY46132 | Canola | endoplasmic reticulum | 4.65 | 10.23 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078G9T3 | UniProt:A0A078G9T3 | EnsemblPlants:CDY21498 | ProteinID:CDY21498 |
| ProteinID:CDY21498.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00015930001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF173 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE6B6F | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g26990DBnaC03g26990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G9T3]
Coordinates
chrLK032121:-:570335..572660
Molecular Weight (calculated)
42365.3 Da
IEP (calculated)
7.019
GRAVY (calculated)
-0.607
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQRGPNYHI DDTPAATVRS TKAADIPMLD YEVAELTWEN GQLGLHGLCP PRVPAPSKYS TGAGGMLESI VDQATRFPNP KPADELVPSF HHRYSRVGMD
101: ALVPEQQSQP ATGVGSCSDG HPMDGGKRAR VAPEWSASGS QRLTIDTYGF TSTSLDVNSS SDGKPFTKTT NIDDHDSVEE EEEEKQTGGK SSASTKRSRA
201: AAIHNQSERK RRDKINQRMK TLQKLVPNSS KTDKASMLDE VIENLKQLQA HVFMMSRMNM PSMMLPMAMQ QQQQQLQLNL MSSSMGLGLR MGMPGLGLVD
301: LSSMNRAATA TAPNIHANMI QNPFVPMTST SWDASSSTDP RFQSPLIPDP MSAFLACSLQ PTTMEAYSRM AALYQQMQQQ LPPSNPK
101: ALVPEQQSQP ATGVGSCSDG HPMDGGKRAR VAPEWSASGS QRLTIDTYGF TSTSLDVNSS SDGKPFTKTT NIDDHDSVEE EEEEKQTGGK SSASTKRSRA
201: AAIHNQSERK RRDKINQRMK TLQKLVPNSS KTDKASMLDE VIENLKQLQA HVFMMSRMNM PSMMLPMAMQ QQQQQLQLNL MSSSMGLGLR MGMPGLGLVD
301: LSSMNRAATA TAPNIHANMI QNPFVPMTST SWDASSSTDP RFQSPLIPDP MSAFLACSLQ PTTMEAYSRM AALYQQMQQQ LPPSNPK
001: MSQCVPNCHI DDTPAAATTT VRSTTAADIP ILDYEVAELT WENGQLGLHG LGPPRVTASS TKYSTGAGGT LESIVDQATR LPNPKPTDEL VPWFHHRSSR
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK
Arabidopsis Description
UNE10Transcription factor UNE10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ38]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.