Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033368.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY18143 | Canola | nucleus | 97.43 | 99.02 |
| CDY21898 | Canola | nucleus | 80.06 | 82.72 |
| CDY22062 | Canola | nucleus | 79.74 | 81.58 |
| CDX91293 | Canola | nucleus | 77.81 | 81.21 |
| CDY18011 | Canola | nucleus | 77.81 | 79.61 |
| AT1G03040.3 | Thale cress | nucleus | 85.21 | 79.58 |
| CDX97278 | Canola | nucleus | 75.88 | 78.93 |
| CDX90930 | Canola | nucleus | 78.14 | 78.39 |
| KRG95612 | Soybean | nucleus | 68.17 | 72.6 |
| KRH67287 | Soybean | nucleus | 66.88 | 71.23 |
| KRH32094 | Soybean | nucleus | 64.63 | 71.02 |
| Solyc09g065820.2.1 | Tomato | nucleus | 68.17 | 70.2 |
| PGSC0003DMT400049768 | Potato | nucleus | 67.85 | 69.87 |
| Os07t0182200-01 | Rice | cytosol | 30.55 | 69.85 |
| VIT_07s0141g00220.t01 | Wine grape | nucleus | 63.99 | 68.86 |
| KRH55381 | Soybean | cytosol | 14.47 | 65.22 |
| GSMUA_Achr4P21070_001 | Banana | nucleus | 53.05 | 55.0 |
| Zm00001d013073_P002 | Maize | nucleus | 49.52 | 54.04 |
| KXG37359 | Sorghum | nucleus | 49.2 | 53.87 |
| OQU88567 | Sorghum | nucleus | 47.59 | 53.43 |
| Os03t0797600-01 | Rice | nucleus | 50.48 | 53.4 |
| TraesCS5D01G449200.1 | Wheat | nucleus | 48.23 | 53.38 |
| TraesCS5B01G445900.1 | Wheat | nucleus | 48.23 | 53.38 |
| Zm00001d018967_P001 | Maize | nucleus | 48.87 | 53.33 |
| GSMUA_Achr5P03100_001 | Banana | nucleus | 46.62 | 52.92 |
| TraesCS5A01G441900.1 | Wheat | nucleus | 45.34 | 50.18 |
| HORVU5Hr1G106310.3 | Barley | nucleus | 46.95 | 46.79 |
| GSMUA_Achr9P25560_001 | Banana | nucleus | 51.77 | 45.61 |
| CDY55014 | Canola | nucleus | 32.48 | 34.95 |
| CDY02785 | Canola | nucleus | 32.8 | 34.46 |
| CDY32733 | Canola | nucleus | 33.44 | 34.44 |
| CDY11836 | Canola | nucleus | 30.87 | 33.57 |
| CDY62262 | Canola | nucleus | 32.15 | 33.11 |
| CDY46132 | Canola | endoplasmic reticulum | 18.33 | 32.39 |
| CDX88653 | Canola | nucleus | 31.19 | 32.33 |
| CDX68710 | Canola | nucleus | 33.44 | 31.8 |
| CDY28232 | Canola | nucleus | 33.44 | 31.8 |
| CDY20289 | Canola | nucleus | 21.54 | 31.75 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 20.58 | 31.53 |
| CDX76819 | Canola | nucleus | 33.76 | 30.88 |
| CDY34780 | Canola | nucleus | 33.44 | 30.77 |
| CDY37185 | Canola | mitochondrion | 9.32 | 29.59 |
| CDY46133 | Canola | nucleus | 16.4 | 26.7 |
| CDY24734 | Canola | plastid | 9.65 | 21.13 |
| CDY01438 | Canola | nucleus, plastid | 12.22 | 17.43 |
| CDY12804 | Canola | nucleus, plastid | 11.9 | 17.13 |
| CDY65390 | Canola | nucleus | 10.93 | 16.27 |
| CDY35224 | Canola | nucleus | 12.86 | 15.44 |
| CDY67566 | Canola | nucleus, plastid | 13.18 | 14.96 |
| CDY00603 | Canola | nucleus, plastid | 13.18 | 14.96 |
| CDX91917 | Canola | nucleus | 14.47 | 12.97 |
| CDX83214 | Canola | nucleus | 13.83 | 12.36 |
| CDY44048 | Canola | nucleus, plastid | 13.5 | 12.32 |
| CDY22448 | Canola | nucleus, plastid | 13.5 | 11.93 |
| CDX75629 | Canola | nucleus | 13.18 | 11.85 |
| CDX69281 | Canola | nucleus, plastid | 13.18 | 11.75 |
| CDX74328 | Canola | nucleus | 14.47 | 11.63 |
| CDY30375 | Canola | nucleus | 15.11 | 11.58 |
| CDY06865 | Canola | nucleus | 13.18 | 11.42 |
| CDY14866 | Canola | nucleus | 14.79 | 11.41 |
| CDY29961 | Canola | nucleus | 14.79 | 11.3 |
| CDX70453 | Canola | nucleus | 14.79 | 11.3 |
| CDX83509 | Canola | nucleus | 14.79 | 11.14 |
| CDY21498 | Canola | nucleus | 13.83 | 11.11 |
| CDY35220 | Canola | nucleus | 13.18 | 11.05 |
| CDX80064 | Canola | nucleus | 14.15 | 11.0 |
| CDY31989 | Canola | nucleus | 16.72 | 10.92 |
| CDY65446 | Canola | nucleus | 11.58 | 10.88 |
| CDX67873 | Canola | nucleus | 10.61 | 10.75 |
| CDY06026 | Canola | nucleus | 15.11 | 10.63 |
| CDY42809 | Canola | nucleus | 14.15 | 10.63 |
| CDY11401 | Canola | extracellular | 11.9 | 10.51 |
| CDY66254 | Canola | nucleus | 13.5 | 10.5 |
| CDX71916 | Canola | nucleus | 14.79 | 10.38 |
| CDY06870 | Canola | nucleus | 15.11 | 10.33 |
| CDY05725 | Canola | nucleus | 16.72 | 10.26 |
| CDX76616 | Canola | extracellular | 11.58 | 10.06 |
| CDY06867 | Canola | nucleus | 15.11 | 9.75 |
| CDX83349 | Canola | nucleus | 12.54 | 9.65 |
| CDY50911 | Canola | nucleus | 8.04 | 9.23 |
| CDX94963 | Canola | nucleus | 14.47 | 9.04 |
| CDY22636 | Canola | nucleus | 14.15 | 8.96 |
| CDY64745 | Canola | nucleus | 14.15 | 8.76 |
| CDY06358 | Canola | nucleus | 13.83 | 8.76 |
| CDY35222 | Canola | nucleus | 14.47 | 7.8 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078DN17 | EnsemblPlants:CDX89919 | ProteinID:CDX89919 | ProteinID:CDX89919.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00150402001 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR16223 | PANTHER:PTHR16223:SF15 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002544BD5 | InterPro:bHLH_dom | SEG:seg | : |
Description
BnaA10g01630D
Coordinates
chrLK031861:+:777477..779817
Molecular Weight (calculated)
33239.7 Da
IEP (calculated)
6.515
GRAVY (calculated)
-0.423
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MATNNNNNLS DQPPSDDFFE QILGISNFSA SSSSGGLSGL PGGLSGGVGP PPPMMLQLGS GEEGSHHNHM GVGPIGGGGG PLGFHNGMFP LGLSLDQGGK
101: GQGFLKPDGS GKRFQDDVVD NRCSSMKPVF HGQPMTQPAP PMPHQQSSIR PRVRARRGQA TDPHSIAERL RRERIAERIR ALQELVPTVN KTDRAAMIDE
201: IVDYVKFLRL QVKVLSMSRL GGAGAVAPLV TEMPLSSSTE DETQAVWEKW SDDGTERQVA KLMEENVGAA MQLLQSKALC IMPVSLAMAI YHSQPPDTSS
301: SVVKPEMNPP Q
101: GQGFLKPDGS GKRFQDDVVD NRCSSMKPVF HGQPMTQPAP PMPHQQSSIR PRVRARRGQA TDPHSIAERL RRERIAERIR ALQELVPTVN KTDRAAMIDE
201: IVDYVKFLRL QVKVLSMSRL GGAGAVAPLV TEMPLSSSTE DETQAVWEKW SDDGTERQVA KLMEENVGAA MQLLQSKALC IMPVSLAMAI YHSQPPDTSS
301: SVVKPEMNPP Q
001: MANNNNIPHD SISDPSPTDD FFEQILGLSN FSGSSGSGLS GIGGVGPPPM MLQLGSGNEG NHNHMGAIGG GGPVGFHNQM FPLGLSLDQG KGHGFLKPDE
101: TGKRFQDDVL DNRCSSMKPI FHGQPMSQPA PPMPHQQSTI RPRVRARRGQ ATDPHSIAER LRRERIAERI RSLQELVPTV NKTDRAAMID EIVDYVKFLR
201: LQVKVLSMSR LGGAGAVAPL VTEMPLSSSV EDETQAVWEK WSNDGTERQV AKLMEENVGA AMQLLQSKAL CIMPISLAMA IYHSQPPDTS SSIVKPEMNP
301: PP
101: TGKRFQDDVL DNRCSSMKPI FHGQPMSQPA PPMPHQQSTI RPRVRARRGQ ATDPHSIAER LRRERIAERI RSLQELVPTV NKTDRAAMID EIVDYVKFLR
201: LQVKVLSMSR LGGAGAVAPL VTEMPLSSSV EDETQAVWEK WSNDGTERQV AKLMEENVGA AMQLLQSKAL CIMPISLAMA IYHSQPPDTS SSIVKPEMNP
301: PP
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G03040]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.