Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28232 | Canola | nucleus | 96.33 | 96.33 |
| Bra011237.1-P | Field mustard | plastid | 62.08 | 93.98 |
| AT4G30980.2 | Thale cress | nucleus, plastid | 68.81 | 62.85 |
| CDY20289 | Canola | nucleus | 37.0 | 57.35 |
| CDX76819 | Canola | nucleus | 57.19 | 55.0 |
| CDY34780 | Canola | nucleus | 56.57 | 54.73 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 31.19 | 50.25 |
| CDY46132 | Canola | endoplasmic reticulum | 26.91 | 50.0 |
| CDY46133 | Canola | nucleus | 29.05 | 49.74 |
| CDY55014 | Canola | nucleus | 39.76 | 44.98 |
| CDY11836 | Canola | nucleus | 39.14 | 44.76 |
| CDY02785 | Canola | nucleus | 39.45 | 43.58 |
| CDY62262 | Canola | nucleus | 39.76 | 43.05 |
| CDY32733 | Canola | nucleus | 39.45 | 42.72 |
| CDX88653 | Canola | nucleus | 39.14 | 42.67 |
| CDY37185 | Canola | mitochondrion | 11.62 | 38.78 |
| CDX91293 | Canola | nucleus | 32.72 | 35.91 |
| CDY21898 | Canola | nucleus | 32.42 | 35.22 |
| CDY18011 | Canola | nucleus | 32.72 | 35.2 |
| CDY22062 | Canola | nucleus | 32.42 | 34.87 |
| CDX97278 | Canola | nucleus | 31.5 | 34.45 |
| CDY18143 | Canola | nucleus | 31.8 | 33.99 |
| CDX90930 | Canola | nucleus | 32.11 | 33.87 |
| CDX89919 | Canola | nucleus | 31.8 | 33.44 |
| CDY24734 | Canola | plastid | 11.01 | 25.35 |
| CDY12804 | Canola | nucleus, plastid | 13.46 | 20.37 |
| CDY01438 | Canola | nucleus, plastid | 13.46 | 20.18 |
| CDY65390 | Canola | nucleus | 12.54 | 19.62 |
| CDY35224 | Canola | nucleus | 14.07 | 17.76 |
| CDY67566 | Canola | nucleus, plastid | 14.68 | 17.52 |
| CDY00603 | Canola | nucleus, plastid | 14.68 | 17.52 |
| CDY44048 | Canola | nucleus, plastid | 16.51 | 15.84 |
| CDY22448 | Canola | nucleus, plastid | 16.82 | 15.62 |
| CDX83214 | Canola | nucleus | 16.21 | 15.23 |
| CDX69281 | Canola | nucleus, plastid | 16.21 | 15.19 |
| CDX75629 | Canola | nucleus | 15.9 | 15.03 |
| CDX91917 | Canola | nucleus | 15.9 | 14.99 |
| CDX83509 | Canola | nucleus | 17.43 | 13.8 |
| CDX74328 | Canola | nucleus | 16.21 | 13.7 |
| CDY31989 | Canola | nucleus | 19.57 | 13.45 |
| CDY14866 | Canola | nucleus | 16.51 | 13.4 |
| CDX67873 | Canola | nucleus | 12.54 | 13.36 |
| CDY29961 | Canola | nucleus | 16.51 | 13.27 |
| CDX70453 | Canola | nucleus | 16.51 | 13.27 |
| CDX80064 | Canola | nucleus | 16.21 | 13.25 |
| CDY05725 | Canola | nucleus | 20.49 | 13.21 |
| CDY35220 | Canola | nucleus | 14.98 | 13.21 |
| CDY21498 | Canola | nucleus | 15.6 | 13.18 |
| CDY30375 | Canola | nucleus | 16.21 | 13.05 |
| CDY50911 | Canola | nucleus | 10.7 | 12.92 |
| CDX83349 | Canola | nucleus | 15.9 | 12.87 |
| CDY06865 | Canola | nucleus | 14.07 | 12.81 |
| CDY42809 | Canola | nucleus | 16.21 | 12.8 |
| CDY66254 | Canola | nucleus | 15.6 | 12.75 |
| CDY65446 | Canola | nucleus | 12.84 | 12.69 |
| CDY22636 | Canola | nucleus | 18.65 | 12.42 |
| CDY06358 | Canola | nucleus | 18.65 | 12.42 |
| CDY06870 | Canola | nucleus | 17.13 | 12.31 |
| CDX94963 | Canola | nucleus | 18.35 | 12.05 |
| CDY64745 | Canola | nucleus | 18.35 | 11.95 |
| CDY06867 | Canola | nucleus | 17.13 | 11.62 |
| CDX71916 | Canola | nucleus | 15.29 | 11.29 |
| CDY06026 | Canola | nucleus | 14.98 | 11.09 |
| CDY11401 | Canola | extracellular | 11.93 | 11.08 |
| CDX76616 | Canola | extracellular | 11.93 | 10.89 |
| CDY35222 | Canola | nucleus | 15.9 | 9.01 |
Protein Annotations
| EnsemblPlants:CDX68710 | EnsemblPlantsGene:GSBRNA2T00130395001 | Gene3D:4.10.280.10 | GO:A0A078BVA1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR16223 | PANTHER:PTHR16223:SF28 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:CDX68710 | ProteinID:CDX68710.1 |
| SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EF2E05 | MapMan:15.5.32 | : |
Description
BnaC01g07430D
Coordinates
chrLK031789:-:892611..895039
Molecular Weight (calculated)
34637.4 Da
IEP (calculated)
6.650
GRAVY (calculated)
-0.455
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSSLLTPSS SSSSPHHLQS PATFDHDDFL QNFFSSAPWP SSALDDDAPP PTSDSSLAGF HHHDVDSRNQ ITMIPLSHHN PNDAVDVNAL YSGFSAGSLP
101: FHFPQGSGGG VIKQSHTQTQ SQATASTTTG GTAATPQTKP KVRARRGQAT DPHSIAERLR RERIAERMKS LQELVPNGNK TDKASMLDEI IDYVKFLQLQ
201: VKVLSMSRLG GAASVSSQIS EDAGGSNENT SGENQMTAKM TEHQVAKLME EDMGSAMQYL QGKGLCLMPI SLATTISNAT CPSRNPLISA VKEAGVPLSP
301: NTATTSILNG NGAPLVTVKD SSSVSKP
101: FHFPQGSGGG VIKQSHTQTQ SQATASTTTG GTAATPQTKP KVRARRGQAT DPHSIAERLR RERIAERMKS LQELVPNGNK TDKASMLDEI IDYVKFLQLQ
201: VKVLSMSRLG GAASVSSQIS EDAGGSNENT SGENQMTAKM TEHQVAKLME EDMGSAMQYL QGKGLCLMPI SLATTISNAT CPSRNPLISA VKEAGVPLSP
301: NTATTSILNG NGAPLVTVKD SSSVSKP
001: MNSSSLLTPS SSPSPHLQSP ATFDHDDFLH HIFSSTPWPS SVLDDTPPPT SDCAPVTGFH HHDADSRNQI TMIPLSHNHP NDALFNGFST GSLPFHLPQG
101: SGGQTQTQSQ ATASATTGGA TAQPQTKPKV RARRGQATDP HSIAERLRRE RIAERMKSLQ ELVPNGNKTD KASMLDEIID YVKFLQLQVK VLSMSRLGGA
201: ASASSQISED AGGSHENTSS SGEAKMTEHQ VAKLMEEDMG SAMQYLQGKG LCLMPISLAT TISTATCPSR SPFVKDTGVP LSPNLSTTIV ANGNGSSLVT
301: VKDAPSVSKP
101: SGGQTQTQSQ ATASATTGGA TAQPQTKPKV RARRGQATDP HSIAERLRRE RIAERMKSLQ ELVPNGNKTD KASMLDEIID YVKFLQLQVK VLSMSRLGGA
201: ASASSQISED AGGSHENTSS SGEAKMTEHQ VAKLMEEDMG SAMQYLQGKG LCLMPISLAT TISTATCPSR SPFVKDTGVP LSPNLSTTIV ANGNGSSLVT
301: VKDAPSVSKP
Arabidopsis Description
LRL2LJRHL1-like 2 [Source:TAIR;Acc:AT4G30980]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.