Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037742.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDX70453 | Canola | nucleus | 97.78 | 97.54 |
| CDY29961 | Canola | nucleus | 97.78 | 97.54 |
| CDY14866 | Canola | nucleus | 92.36 | 93.05 |
| CDX83509 | Canola | nucleus | 76.85 | 75.54 |
| CDY42809 | Canola | nucleus | 76.85 | 75.36 |
| AT2G43010.5 | Thale cress | extracellular, vacuole | 78.82 | 67.8 |
| CDY00603 | Canola | nucleus, plastid | 40.39 | 59.85 |
| CDY67566 | Canola | nucleus, plastid | 40.39 | 59.85 |
| CDY06026 | Canola | nucleus | 61.58 | 56.56 |
| CDX71916 | Canola | nucleus | 61.58 | 56.43 |
| CDY37185 | Canola | mitochondrion | 10.34 | 42.86 |
| TraesCS2A01G253900.2 | Wheat | nucleus | 29.56 | 33.52 |
| TraesCS2B01G273500.1 | Wheat | nucleus | 29.31 | 33.24 |
| HORVU2Hr1G060680.1 | Barley | nucleus | 29.31 | 32.87 |
| Solyc07g043580.2.1 | Tomato | nucleus | 39.66 | 32.53 |
| HORVU5Hr1G102240.3 | Barley | nucleus | 31.28 | 32.07 |
| KRH45975 | Soybean | nucleus | 41.38 | 32.0 |
| VIT_12s0028g01110.t01 | Wine grape | nucleus | 43.35 | 31.54 |
| Os03t0782500-01 | Rice | nucleus | 31.77 | 31.46 |
| PGSC0003DMT400041156 | Potato | nucleus | 39.9 | 31.33 |
| TraesCS5B01G422000.1 | Wheat | nucleus | 31.03 | 30.73 |
| TraesCS5D01G428400.2 | Wheat | nucleus | 31.03 | 30.14 |
| KRG99030 | Soybean | nucleus | 40.39 | 29.98 |
| Zm00001d034298_P001 | Maize | nucleus | 30.54 | 29.38 |
| KRH73584 | Soybean | nucleus | 40.15 | 29.0 |
| KRH14535 | Soybean | nucleus | 40.15 | 29.0 |
| TraesCS5A01G420200.1 | Wheat | nucleus | 29.31 | 28.33 |
| TraesCS2D01G254400.3 | Wheat | nucleus | 29.8 | 28.14 |
| OQU88421 | Sorghum | nucleus | 28.57 | 28.09 |
| Zm00001d013130_P001 | Maize | nucleus | 25.12 | 26.36 |
| Os07t0143200-01 | Rice | nucleus | 26.6 | 26.09 |
| CDY24734 | Canola | plastid | 8.87 | 25.35 |
| CDY31989 | Canola | nucleus | 28.08 | 23.95 |
| CDY35224 | Canola | nucleus | 15.02 | 23.55 |
| CDY01438 | Canola | nucleus, plastid | 12.56 | 23.39 |
| CDY12804 | Canola | nucleus, plastid | 12.32 | 23.15 |
| CDY35220 | Canola | nucleus | 20.94 | 22.91 |
| CDY05725 | Canola | nucleus | 28.57 | 22.88 |
| CDY20289 | Canola | nucleus | 11.82 | 22.75 |
| CDY06870 | Canola | nucleus | 24.88 | 22.2 |
| CDY65390 | Canola | nucleus | 11.33 | 22.01 |
| CDX91917 | Canola | nucleus | 18.47 | 21.61 |
| CDX83214 | Canola | nucleus | 18.23 | 21.26 |
| CDY06865 | Canola | nucleus | 18.72 | 21.17 |
| CDY06867 | Canola | nucleus | 24.88 | 20.95 |
| CDX69281 | Canola | nucleus, plastid | 17.98 | 20.92 |
| CDY44048 | Canola | nucleus, plastid | 17.49 | 20.82 |
| CDY22448 | Canola | nucleus, plastid | 17.73 | 20.45 |
| CDX75629 | Canola | nucleus | 17.24 | 20.23 |
| CDX67873 | Canola | nucleus | 15.27 | 20.2 |
| CDX74328 | Canola | nucleus | 18.72 | 19.64 |
| CDY65446 | Canola | nucleus | 15.76 | 19.34 |
| CDY21498 | Canola | nucleus | 18.23 | 19.12 |
| CDY22636 | Canola | nucleus | 22.41 | 18.53 |
| CDX80064 | Canola | nucleus | 18.23 | 18.5 |
| CDX94963 | Canola | nucleus | 22.41 | 18.27 |
| CDY06358 | Canola | nucleus | 21.92 | 18.13 |
| CDY46133 | Canola | nucleus | 8.37 | 17.8 |
| CDY66254 | Canola | nucleus | 17.49 | 17.75 |
| CDY64745 | Canola | nucleus | 21.92 | 17.73 |
| CDX83349 | Canola | nucleus | 17.24 | 17.33 |
| CDY11836 | Canola | nucleus | 12.07 | 17.13 |
| KXG37432 | Sorghum | plastid | 20.2 | 17.01 |
| CDY55014 | Canola | nucleus | 11.82 | 16.61 |
| CDX91293 | Canola | nucleus | 12.07 | 16.44 |
| CDX88653 | Canola | nucleus | 12.07 | 16.33 |
| CDY21898 | Canola | nucleus | 12.07 | 16.28 |
| CDY62262 | Canola | nucleus | 12.07 | 16.23 |
| CDY28232 | Canola | nucleus | 13.05 | 16.21 |
| CDX68710 | Canola | nucleus | 13.05 | 16.21 |
| CDY18011 | Canola | nucleus | 12.07 | 16.12 |
| CDY22062 | Canola | nucleus | 12.07 | 16.12 |
| CDY02785 | Canola | nucleus | 11.58 | 15.88 |
| CDY50911 | Canola | nucleus | 10.59 | 15.87 |
| CDX97278 | Canola | nucleus | 11.58 | 15.72 |
| CDY18143 | Canola | nucleus | 11.82 | 15.69 |
| CDX76616 | Canola | extracellular | 13.79 | 15.64 |
| CDY32733 | Canola | nucleus | 11.58 | 15.56 |
| CDX90930 | Canola | nucleus | 11.82 | 15.48 |
| CDY35222 | Canola | nucleus | 21.92 | 15.42 |
| CDY34780 | Canola | nucleus | 12.81 | 15.38 |
| CDY11401 | Canola | extracellular | 13.3 | 15.34 |
| CDX89919 | Canola | nucleus | 11.58 | 15.11 |
| CDX76819 | Canola | nucleus | 12.56 | 15.0 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 6.16 | 12.32 |
| CDY46132 | Canola | endoplasmic reticulum | 4.19 | 9.66 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.1.4 | Gene3D:4.10.280.10 | GO:A0A078GV37 | UniProt:A0A078GV37 | EnsemblPlants:CDY30375 |
| ProteinID:CDY30375 | ProteinID:CDY30375.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00045066001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF194 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002543ABE |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
BnaA04g24760DBnaA04g24760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GV37]
Coordinates
chrLK032253:+:16178..18019
Molecular Weight (calculated)
45753.6 Da
IEP (calculated)
8.340
GRAVY (calculated)
-0.858
Length
406 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHQGWNFEE NYNLSNNRRP LRPQDELVEL LWRDGQVVLQ SQTNREQTQA QTVKHDHHQE TLRSQTFLDD QETVSWLQYP PYEDQFITDG FSSHFFSTGN
101: PLERPAPETV KHEAGPDPPD QAMPPPKFRL TNSSSSVKEL GKEQYSVVTV GPSHCGSSQS HNNLDVSMRH DRSKTVNERL YHNAGSSSGG SSGCSFGKNI
201: KEMAGVQSIT TDRKRKHIID TDGYVSQSDV IGNKSNQPSG STRRSRAAEV HNLSERRRRD RINERMKALQ ELIPHCTKTD KASILDEAID YMKSLKLQLQ
301: VMWMGNGMAA AATAPMMLPD VQPQPFIRQM QSPVQLPRFP VMNNPGIVCQ NPVQNQVFSN RFDRYIGVFP QMQAASQPMA MLRFGSQAGQ QSQQPSAPTK
401: TTDGSR
101: PLERPAPETV KHEAGPDPPD QAMPPPKFRL TNSSSSVKEL GKEQYSVVTV GPSHCGSSQS HNNLDVSMRH DRSKTVNERL YHNAGSSSGG SSGCSFGKNI
201: KEMAGVQSIT TDRKRKHIID TDGYVSQSDV IGNKSNQPSG STRRSRAAEV HNLSERRRRD RINERMKALQ ELIPHCTKTD KASILDEAID YMKSLKLQLQ
301: VMWMGNGMAA AATAPMMLPD VQPQPFIRQM QSPVQLPRFP VMNNPGIVCQ NPVQNQVFSN RFDRYIGVFP QMQAASQPMA MLRFGSQAGQ QSQQPSAPTK
401: TTDGSR
001: MEHQGWSFEE NYSLSTNRRS IRPQDELVEL LWRDGQVVLQ SQTHREQTQT QKQDHHEEAL RSSTFLEDQE TVSWIQYPPD EDPFEPDDFS SHFFSTMDPL
101: QRPTSETVKP KSSPEPPQVM VKPKACPDPP PQVMPPPKFR LTNSSSGIRE TEMEQYSVTT VGPSHCGSNP SQNDLDVSMS HDRSKNIEEK LNPNASSSSG
201: GSSGCSFGKD IKEMASGRCI TTDRKRKRIN HTDESVSLSD AIGNKSNQRS GSNRRSRAAE VHNLSERRRR DRINERMKAL QELIPHCSKT DKASILDEAI
301: DYLKSLQLQL QVMWMGSGMA AAAASAPMMF PGVQPQQFIR QIQSPVQLPR FPVMDQSAIQ NNPGLVCQNP VQNQIISDRF ARYIGGFPHM QAATQPMEML
401: RFSSPAGQQS QQPSSVPTKT TDGSRLDH
101: QRPTSETVKP KSSPEPPQVM VKPKACPDPP PQVMPPPKFR LTNSSSGIRE TEMEQYSVTT VGPSHCGSNP SQNDLDVSMS HDRSKNIEEK LNPNASSSSG
201: GSSGCSFGKD IKEMASGRCI TTDRKRKRIN HTDESVSLSD AIGNKSNQRS GSNRRSRAAE VHNLSERRRR DRINERMKAL QELIPHCSKT DKASILDEAI
301: DYLKSLQLQL QVMWMGSGMA AAAASAPMMF PGVQPQQFIR QIQSPVQLPR FPVMDQSAIQ NNPGLVCQNP VQNQIISDRF ARYIGGFPHM QAATQPMEML
401: RFSSPAGQQS QQPSSVPTKT TDGSRLDH
Arabidopsis Description
PIF4phytochrome interacting factor 4 [Source:TAIR;Acc:AT2G43010]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.