Factsheet for Solyc07g043580.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041156	Potato	nucleus	97.37	93.23
VIT_12s0028g01110.t01	Wine grape	nucleus	56.77	50.36
KRH45975	Soybean	nucleus	46.67	44.0
KRG99030	Soybean	nucleus	46.67	42.23
CDY00603	Canola	nucleus, plastid	23.23	41.97
CDY67566	Canola	nucleus, plastid	23.23	41.97
KRH14535	Soybean	nucleus	46.26	40.75
KRH73584	Soybean	nucleus	46.06	40.57
Bra037742.1-P	Field mustard	nucleus	32.53	39.66
CDY30375	Canola	nucleus	32.53	39.66
CDX70453	Canola	nucleus	32.32	39.31
CDY29961	Canola	nucleus	32.32	39.31
CDX83509	Canola	nucleus	32.32	38.74
Bra000283.1-P	Field mustard	nucleus	32.32	38.74
CDY42809	Canola	nucleus	32.32	38.65
CDY14866	Canola	nucleus	31.11	38.21
Bra007430.1-P	Field mustard	nucleus	31.72	36.85
AT3G59060.2	Thale cress	nucleus	32.53	36.26
HORVU5Hr1G102240.3	Barley	nucleus	28.69	35.86
Os03t0782500-01	Rice	nucleus	29.7	35.85
CDX71916	Canola	nucleus	31.92	35.67
CDY06026	Canola	nucleus	31.72	35.52
TraesCS5B01G422000.1	Wheat	nucleus	29.29	35.37
AT2G43010.5	Thale cress	extracellular, vacuole	32.93	34.53
TraesCS5D01G428400.2	Wheat	nucleus	28.89	34.21
Zm00001d034298_P001	Maize	nucleus	28.89	33.89
TraesCS2B01G273500.1	Wheat	nucleus	23.84	32.96
TraesCS2A01G253900.2	Wheat	nucleus	23.64	32.68
TraesCS5A01G420200.1	Wheat	nucleus	27.68	32.62
OQU88421	Sorghum	nucleus	26.87	32.2
Zm00001d013130_P001	Maize	nucleus	24.65	31.52
HORVU2Hr1G060680.1	Barley	nucleus	23.03	31.49
Os07t0143200-01	Rice	nucleus	25.05	29.95
TraesCS2D01G254400.3	Wheat	nucleus	23.84	27.44
Solyc06g008030.2.1	Tomato	nucleus	26.06	25.2
Solyc09g063010.2.1	Tomato	nucleus	27.88	24.78
Solyc04g078690.2.1	Tomato	nucleus	13.33	21.02
Solyc04g007430.1.1	Tomato	nucleus	7.47	20.11
Solyc03g115540.1.1	Tomato	nucleus	17.78	20.05
Solyc02g093280.2.1	Tomato	nucleus	14.95	19.58
Solyc03g005350.2.1	Tomato	nucleus	11.52	19.26
KXG37432	Sorghum	plastid	18.59	19.09
Solyc09g083220.2.1	Tomato	nucleus	11.31	18.42
Solyc01g102300.2.1	Tomato	nucleus	26.46	18.32
Solyc01g090790.2.1	Tomato	nucleus	17.17	18.32
Solyc06g069600.1.1	Tomato	nucleus	15.15	18.12
Solyc10g018510.1.1	Tomato	nucleus	13.94	17.65
Solyc09g065820.2.1	Tomato	nucleus	10.1	16.56
Solyc12g010170.1.1	Tomato	nucleus	12.73	16.28
Solyc07g005400.2.1	Tomato	nucleus	14.14	15.91

Protein Annotations

EnsemblPlants:Solyc07g043580.2.1	EnsemblPlantsGene:Solyc07g043580.2	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR12565	PANTHER:PTHR12565:SF145	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000276C5DA	UniProt:K4CEL5	MapMan:15.5.32	MapMan:26.1.1.4	:

Description

No Description!

Coordinates

chr7:+:57503383..57506337

Molecular Weight (calculated)

54716.0 Da

IEP (calculated)

7.117

GRAVY (calculated)

-0.796

Length

495 amino acids

Sequence
(BLAST)

001: MGFDHELVEL LWRNGEVVLH SQTHKKQPGY DPNECRQFNK HDQPTIRVAG NQTNLIQDDE TVAWLNCPID DSFDKEFCSP FLSDISTNPH LGEEPDKSIR
101: QSEDNNKVFK FDPLEINHVL PQSHHSGFDP NPMPPPRFHN FGSAQQKHHI VGGDQKGVNF PPPIRSSNVQ LGGKEARSNL MLQDIKEGSV MTVGSSHCGS
201: NQVDTSRFSS SANRGLSAAM ITDYTGKISP QSDTMDRDTF EPANTSSSSG RSGSSYARAC NQSTATNSQG HKRKSRDGEE PECQSKADEL ESAGGNKSAQ
301: KSGTARRSRA AEVHNLSERR RRDRINEKMK ALQELLPHST KTDKASMLDE AIEYLKSLQM QLQMMWMGSG MASMMFPGVQ HYISRMGMGM GPPSVPSMHN
401: AMHLARLPLV DPAIPLTQAA PNNQAAAMCQ NSMLNQVNYQ RHLQNPNFPD QYASYMGFHP LQGASQPINI FGLGSHTAQQ TQQLPHPTNS NAPAT

Best Arabidopsis Sequence Match ( AT2G43010.2 )
(BLAST)

001: MEHQGWSFEE NYSLSTNRRS IRPQDELVEL LWRDGQVVLQ SQTHREQTQT QKQDHHEEAL RSSTFLEDQE TVSWIQYPPD EDPFEPDDFS SHFFSTMDPL
101: QRPTSETVKP KSSPEPPQVM VKPKACPDPP PQVMPPPKFR LTNSSSGIRE TEMEQYSVTT VGPSHCGSNP SQNDLDVSMS HDRSKNIEEK LNPNASSSSG
201: GSSGCSFGKD IKEMASGRCI TTDRKRKRIN HTDESVSLSD AIGNKSNQRS GSNRRSRAAE VHNLSERRRR DRINERMKAL QELIPHCSKT DKASILDEAI
301: DYLKSLQLQL QVMWMGSGMA AAAASAPMMF PGVQPQQFIR QIQSPVQLPR FPVMDQSAIQ NNPGLVCQNP VQNQIISDRF ARYIGGFPHM QAATQPMEML
401: RFSSPAGQQS QQPSSVPTKT TDGSRLDH

Arabidopsis Description

PIF4phytochrome interacting factor 4 [Source:TAIR;Acc:AT2G43010]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.