Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G273500.1 | Wheat | nucleus | 96.37 | 96.37 |
| HORVU2Hr1G060680.1 | Barley | nucleus | 89.39 | 88.4 |
| TraesCS2D01G254400.3 | Wheat | nucleus | 96.09 | 80.0 |
| Os07t0143200-01 | Rice | nucleus | 56.98 | 49.28 |
| OQU88421 | Sorghum | nucleus | 56.42 | 48.91 |
| TraesCS5A01G420200.1 | Wheat | nucleus | 46.93 | 40.0 |
| TraesCS6A01G190600.1 | Wheat | nucleus | 12.57 | 34.88 |
| CDY00603 | Canola | nucleus, plastid | 26.54 | 34.67 |
| CDY67566 | Canola | nucleus, plastid | 26.54 | 34.67 |
| CDY30375 | Canola | nucleus | 33.52 | 29.56 |
| Bra037742.1-P | Field mustard | nucleus | 33.52 | 29.56 |
| CDY29961 | Canola | nucleus | 32.96 | 28.99 |
| CDX70453 | Canola | nucleus | 32.96 | 28.99 |
| CDY14866 | Canola | nucleus | 32.4 | 28.78 |
| Bra007430.1-P | Field mustard | nucleus | 33.24 | 27.93 |
| CDX83509 | Canola | nucleus | 32.12 | 27.84 |
| Bra000283.1-P | Field mustard | nucleus | 32.12 | 27.84 |
| TraesCS2A01G461700.2 | Wheat | nucleus | 14.53 | 27.66 |
| CDY06026 | Canola | nucleus | 33.52 | 27.15 |
| CDY42809 | Canola | nucleus | 31.28 | 27.05 |
| AT3G59060.2 | Thale cress | nucleus | 33.52 | 27.03 |
| CDX71916 | Canola | nucleus | 32.96 | 26.64 |
| AT2G43010.5 | Thale cress | extracellular, vacuole | 33.8 | 25.64 |
| TraesCS5A01G049600.1 | Wheat | nucleus | 24.02 | 25.6 |
| Solyc07g043580.2.1 | Tomato | nucleus | 32.68 | 23.64 |
| KRH45975 | Soybean | nucleus | 34.36 | 23.43 |
| PGSC0003DMT400041156 | Potato | nucleus | 33.24 | 23.02 |
| KRG99030 | Soybean | nucleus | 34.36 | 22.49 |
| VIT_12s0028g01110.t01 | Wine grape | nucleus | 34.08 | 21.86 |
| KRH73584 | Soybean | nucleus | 34.08 | 21.71 |
| TraesCS6A01G373500.2 | Wheat | nucleus | 18.16 | 21.45 |
| KRH14535 | Soybean | nucleus | 32.96 | 21.0 |
| TraesCS5A01G376500.1 | Wheat | nucleus | 27.09 | 19.92 |
| TraesCS7A01G126900.1 | Wheat | nucleus | 17.32 | 18.73 |
| TraesCS1A01G083000.1 | Wheat | nucleus | 23.18 | 16.37 |
| TraesCS5A01G441900.1 | Wheat | nucleus | 12.29 | 15.66 |
| TraesCS1A01G212700.1 | Wheat | nucleus | 19.27 | 15.16 |
| TraesCS6A01G358400.3 | Wheat | nucleus | 16.2 | 14.95 |
| TraesCS7A01G147500.1 | Wheat | nucleus | 16.2 | 14.57 |
| TraesCS5A01G225700.1 | Wheat | nucleus | 16.2 | 12.66 |
| TraesCS7A01G157700.1 | Wheat | nucleus | 12.85 | 9.58 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G253900.2 | EnsemblPlantsGene:TraesCS2A01G253900 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF194 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | MapMan:26.1.1.4 | : | : |
Description
No Description!
Coordinates
chr2A:-:386295381..386296999
Molecular Weight (calculated)
38138.0 Da
IEP (calculated)
6.506
GRAVY (calculated)
-0.563
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDGARPAPN HKRHLPLQEA GGELVELLWQ DGAIVAQAQA QTPHRRCPQS GAASGVTAED ASAWLIPDGG GGGRDLYSHL WHGVADGDAG ALVAGSGAGT
101: SFCGSNAVTA PALLPSPEEE PGSSSAGGQA LLSKRGRDEL GSRREDADDC EAVNETRPQR PAAKRRTRAA EVHNQSERKR RDRINEKMKA LQELVPHCNK
201: SDKASILDEA IEYLKSLQLQ VQIMWMATGM APMMYPGAHQ LMPPMAMGLN SACMPAAQSL SQLQRVAPFM NHHLPNQMPR VQSPAMDSLN VGNNGVCGEP
301: RNPFLHPGNT LTAASQLPDM FPYASQKAQQ NQNHQLLPNT DMPASGPCSP SFADGTGT
101: SFCGSNAVTA PALLPSPEEE PGSSSAGGQA LLSKRGRDEL GSRREDADDC EAVNETRPQR PAAKRRTRAA EVHNQSERKR RDRINEKMKA LQELVPHCNK
201: SDKASILDEA IEYLKSLQLQ VQIMWMATGM APMMYPGAHQ LMPPMAMGLN SACMPAAQSL SQLQRVAPFM NHHLPNQMPR VQSPAMDSLN VGNNGVCGEP
301: RNPFLHPGNT LTAASQLPDM FPYASQKAQQ NQNHQLLPNT DMPASGPCSP SFADGTGT
001: MDPQQQPSSD QNLFIQEDEM TSWLHYPLRD DDFCSDLLFS AAPTATATAT VSQVTAARPP VSSTNESRPP VRNFMNFSRL RGDFNNGRGG ESGPLLSKAV
101: VRESTQVSPS ATPSAAASES GLTRRTDGTD SSAVAGGGAY NRKGKAVAMT APAIEITGTS SSVVSKSEIE PEKTNVDDRK RKEREATTTD ETESRSEETK
201: QARVSTTSTK RSRAAEVHNL SERKRRDRIN ERMKALQELI PRCNKSDKAS MLDEAIEYMK SLQLQIQMMS MGCGMMPMMY PGMQQYMPHM AMGMGMNQPI
301: PPPSFMPFPN MLAAQRPLPT QTHMAGSGPQ YPVHASDPSR VFVPNQQYDP TSGQPQYPAG YTDPYQQFRG LHPTQPPQFQ NQATSYPSSS RVSSSKESED
401: HGNHTTG
101: VRESTQVSPS ATPSAAASES GLTRRTDGTD SSAVAGGGAY NRKGKAVAMT APAIEITGTS SSVVSKSEIE PEKTNVDDRK RKEREATTTD ETESRSEETK
201: QARVSTTSTK RSRAAEVHNL SERKRRDRIN ERMKALQELI PRCNKSDKAS MLDEAIEYMK SLQLQIQMMS MGCGMMPMMY PGMQQYMPHM AMGMGMNQPI
301: PPPSFMPFPN MLAAQRPLPT QTHMAGSGPQ YPVHASDPSR VFVPNQQYDP TSGQPQYPAG YTDPYQQFRG LHPTQPPQFQ NQATSYPSSS RVSSSKESED
401: HGNHTTG
Arabidopsis Description
PIF1Transcription factor PIF1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZM7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.