Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83509 | Canola | nucleus | 95.89 | 96.13 |
| Bra000283.1-P | Field mustard | nucleus | 95.65 | 95.88 |
| CDY30375 | Canola | nucleus | 75.36 | 76.85 |
| CDY29961 | Canola | nucleus | 73.91 | 75.18 |
| CDX70453 | Canola | nucleus | 73.91 | 75.18 |
| CDY14866 | Canola | nucleus | 72.22 | 74.19 |
| AT2G43010.5 | Thale cress | extracellular, vacuole | 77.29 | 67.8 |
| CDY00603 | Canola | nucleus, plastid | 40.34 | 60.95 |
| CDY67566 | Canola | nucleus, plastid | 40.34 | 60.95 |
| CDX71916 | Canola | nucleus | 60.14 | 56.21 |
| CDY06026 | Canola | nucleus | 59.66 | 55.88 |
| CDY37185 | Canola | mitochondrion | 9.42 | 39.8 |
| KRH45975 | Soybean | nucleus | 41.79 | 32.95 |
| Os03t0782500-01 | Rice | nucleus | 32.37 | 32.68 |
| Solyc07g043580.2.1 | Tomato | nucleus | 38.65 | 32.32 |
| HORVU5Hr1G102240.3 | Barley | nucleus | 30.92 | 32.32 |
| VIT_12s0028g01110.t01 | Wine grape | nucleus | 42.51 | 31.54 |
| HORVU2Hr1G060680.1 | Barley | nucleus | 27.54 | 31.49 |
| PGSC0003DMT400041156 | Potato | nucleus | 39.13 | 31.33 |
| TraesCS2A01G253900.2 | Wheat | nucleus | 27.05 | 31.28 |
| TraesCS2B01G273500.1 | Wheat | nucleus | 27.05 | 31.28 |
| KRG99030 | Soybean | nucleus | 41.3 | 31.26 |
| TraesCS5B01G422000.1 | Wheat | nucleus | 30.43 | 30.73 |
| KRH73584 | Soybean | nucleus | 41.3 | 30.43 |
| TraesCS5D01G428400.2 | Wheat | nucleus | 30.68 | 30.38 |
| Zm00001d034298_P001 | Maize | nucleus | 30.92 | 30.33 |
| KRH14535 | Soybean | nucleus | 41.06 | 30.25 |
| TraesCS5A01G420200.1 | Wheat | nucleus | 29.23 | 28.81 |
| OQU88421 | Sorghum | nucleus | 28.26 | 28.33 |
| Zm00001d013130_P001 | Maize | nucleus | 25.85 | 27.65 |
| Os07t0143200-01 | Rice | nucleus | 26.81 | 26.81 |
| TraesCS2D01G254400.3 | Wheat | nucleus | 27.29 | 26.28 |
| CDY24734 | Canola | plastid | 8.21 | 23.94 |
| CDY35224 | Canola | nucleus | 14.98 | 23.94 |
| CDY31989 | Canola | nucleus | 26.81 | 23.32 |
| CDY35220 | Canola | nucleus | 20.53 | 22.91 |
| CDY05725 | Canola | nucleus | 27.78 | 22.68 |
| CDY20289 | Canola | nucleus | 11.35 | 22.27 |
| CDY01438 | Canola | nucleus, plastid | 11.59 | 22.02 |
| CDY06870 | Canola | nucleus | 24.15 | 21.98 |
| CDY12804 | Canola | nucleus, plastid | 11.35 | 21.76 |
| CDX91917 | Canola | nucleus | 17.15 | 20.46 |
| CDY06867 | Canola | nucleus | 23.67 | 20.33 |
| CDX83214 | Canola | nucleus | 16.91 | 20.11 |
| CDY65390 | Canola | nucleus | 10.14 | 20.1 |
| CDY06865 | Canola | nucleus | 17.39 | 20.06 |
| CDX67873 | Canola | nucleus | 14.73 | 19.87 |
| CDX69281 | Canola | nucleus, plastid | 16.43 | 19.48 |
| CDX74328 | Canola | nucleus | 17.87 | 19.12 |
| CDY44048 | Canola | nucleus, plastid | 15.7 | 19.06 |
| CDY65446 | Canola | nucleus | 15.22 | 19.03 |
| CDX75629 | Canola | nucleus | 15.7 | 18.79 |
| CDY22448 | Canola | nucleus, plastid | 15.94 | 18.75 |
| CDY06358 | Canola | nucleus | 22.22 | 18.74 |
| CDY22636 | Canola | nucleus | 22.22 | 18.74 |
| CDY21498 | Canola | nucleus | 17.15 | 18.35 |
| CDX80064 | Canola | nucleus | 17.63 | 18.25 |
| CDX94963 | Canola | nucleus | 21.74 | 18.07 |
| CDY64745 | Canola | nucleus | 21.5 | 17.73 |
| CDY66254 | Canola | nucleus | 16.91 | 17.5 |
| CDY46133 | Canola | nucleus | 7.97 | 17.28 |
| CDX83349 | Canola | nucleus | 16.43 | 16.83 |
| KXG37432 | Sorghum | plastid | 19.32 | 16.6 |
| CDY11836 | Canola | nucleus | 11.35 | 16.43 |
| CDX68710 | Canola | nucleus | 12.8 | 16.21 |
| CDY28232 | Canola | nucleus | 12.8 | 16.21 |
| CDX76616 | Canola | extracellular | 14.01 | 16.2 |
| CDY11401 | Canola | extracellular | 13.77 | 16.19 |
| CDY34780 | Canola | nucleus | 13.04 | 15.98 |
| CDY55014 | Canola | nucleus | 11.11 | 15.92 |
| CDX88653 | Canola | nucleus | 11.35 | 15.67 |
| CDX76819 | Canola | nucleus | 12.8 | 15.59 |
| CDY62262 | Canola | nucleus | 11.35 | 15.56 |
| CDY02785 | Canola | nucleus | 11.11 | 15.54 |
| CDY50911 | Canola | nucleus | 10.14 | 15.5 |
| CDY35222 | Canola | nucleus | 21.5 | 15.42 |
| CDY32733 | Canola | nucleus | 11.11 | 15.23 |
| CDX91293 | Canola | nucleus | 10.87 | 15.1 |
| CDY21898 | Canola | nucleus | 10.87 | 14.95 |
| CDY22062 | Canola | nucleus | 10.87 | 14.8 |
| CDY18143 | Canola | nucleus | 10.87 | 14.71 |
| CDY18011 | Canola | nucleus | 10.63 | 14.47 |
| CDX97278 | Canola | nucleus | 10.39 | 14.38 |
| CDX89919 | Canola | nucleus | 10.63 | 14.15 |
| CDX90930 | Canola | nucleus | 10.39 | 13.87 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 6.52 | 13.3 |
| CDY46132 | Canola | endoplasmic reticulum | 4.59 | 10.8 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.1.4 | Gene3D:4.10.280.10 | GO:A0A078HZN7 | UniProt:A0A078HZN7 | EnsemblPlants:CDY42809 |
| ProteinID:CDY42809 | ProteinID:CDY42809.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00075487001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF194 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EED324 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
BnaC03g23970DBnaC03g23970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZN7]
Coordinates
chrLK032535:-:91759..94588
Molecular Weight (calculated)
46262.0 Da
IEP (calculated)
5.871
GRAVY (calculated)
-0.808
Length
414 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHQGWSFEE NYNLSNNRRF IRPQDELVEL LWRDGQVVQQ SQTHRDQTQA QAQAQKQDQE TLRSNTFLED QETVSWIQYP LDEDPFESED FTLPFFSTID
101: PLQRPASETV KHEAGPVPPD QVMPPPKFRL TDSSSGGREL GKEQYSVMTV GPSHCGSNQS QTDLDVSLTH DPSKTIDERL YSTENSSSGG SSGCSFGKNN
201: KEIACGRSIT AERKRKHIMD TDESVSQSDA IGNSKSNQGS GSTRRSRAAE VHNLSERRRR DRINERMKAL HELIPHCTKT DKASILEEAI DYLKSLQLQL
301: QVMWMGSGMA GAAATPIMFP GVQPPPPFIR QVQSPVLLPR FPVMDGSAIQ NNPGLVCQNP VQSQVFPDRF GRYVGLFPRM QGTSQPMEMM TFGSPAGQES
401: QRTSAPTKTT DGPR
101: PLQRPASETV KHEAGPVPPD QVMPPPKFRL TDSSSGGREL GKEQYSVMTV GPSHCGSNQS QTDLDVSLTH DPSKTIDERL YSTENSSSGG SSGCSFGKNN
201: KEIACGRSIT AERKRKHIMD TDESVSQSDA IGNSKSNQGS GSTRRSRAAE VHNLSERRRR DRINERMKAL HELIPHCTKT DKASILEEAI DYLKSLQLQL
301: QVMWMGSGMA GAAATPIMFP GVQPPPPFIR QVQSPVLLPR FPVMDGSAIQ NNPGLVCQNP VQSQVFPDRF GRYVGLFPRM QGTSQPMEMM TFGSPAGQES
401: QRTSAPTKTT DGPR
001: MEHQGWSFEE NYSLSTNRRS IRPQDELVEL LWRDGQVVLQ SQTHREQTQT QKQDHHEEAL RSSTFLEDQE TVSWIQYPPD EDPFEPDDFS SHFFSTMDPL
101: QRPTSETVKP KSSPEPPQVM VKPKACPDPP PQVMPPPKFR LTNSSSGIRE TEMEQYSVTT VGPSHCGSNP SQNDLDVSMS HDRSKNIEEK LNPNASSSSG
201: GSSGCSFGKD IKEMASGRCI TTDRKRKRIN HTDESVSLSD AIGNKSNQRS GSNRRSRAAE VHNLSERRRR DRINERMKAL QELIPHCSKT DKASILDEAI
301: DYLKSLQLQL QVMWMGSGMA AAAASAPMMF PGVQPQQFIR QIQSPVQLPR FPVMDQSAIQ NNPGLVCQNP VQNQIISDRF ARYIGGFPHM QAATQPMEML
401: RFSSPAGQQS QQPSSVPTKT TDGSRLDH
101: QRPTSETVKP KSSPEPPQVM VKPKACPDPP PQVMPPPKFR LTNSSSGIRE TEMEQYSVTT VGPSHCGSNP SQNDLDVSMS HDRSKNIEEK LNPNASSSSG
201: GSSGCSFGKD IKEMASGRCI TTDRKRKRIN HTDESVSLSD AIGNKSNQRS GSNRRSRAAE VHNLSERRRR DRINERMKAL QELIPHCSKT DKASILDEAI
301: DYLKSLQLQL QVMWMGSGMA AAAASAPMMF PGVQPQQFIR QIQSPVQLPR FPVMDQSAIQ NNPGLVCQNP VQNQIISDRF ARYIGGFPHM QAATQPMEML
401: RFSSPAGQQS QQPSSVPTKT TDGSRLDH
Arabidopsis Description
PIF4phytochrome interacting factor 4 [Source:TAIR;Acc:AT2G43010]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.