Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031668.1-P | Field mustard | nucleus | 95.93 | 95.73 |
| CDY06358 | Canola | nucleus | 94.3 | 94.3 |
| CDY64745 | Canola | nucleus | 81.26 | 79.48 |
| AT1G09530.3 | Thale cress | nucleus | 84.32 | 79.01 |
| CDX94963 | Canola | nucleus | 79.84 | 78.71 |
| CDY37185 | Canola | mitochondrion | 9.98 | 50.0 |
| VIT_07s0005g02510.t01 | Wine grape | nucleus | 14.05 | 34.5 |
| CDY24734 | Canola | plastid | 8.76 | 30.28 |
| CDY00603 | Canola | nucleus, plastid | 16.09 | 28.83 |
| CDY67566 | Canola | nucleus, plastid | 16.09 | 28.83 |
| KRG96663 | Soybean | nucleus | 36.05 | 27.96 |
| KRH68390 | Soybean | nucleus | 35.23 | 27.72 |
| CDY01438 | Canola | nucleus, plastid | 12.22 | 27.52 |
| CDY12804 | Canola | nucleus, plastid | 12.02 | 27.31 |
| PGSC0003DMT400047079 | Potato | nucleus | 36.05 | 25.0 |
| Zm00001d024783_P001 | Maize | nucleus | 25.46 | 24.75 |
| CDY35224 | Canola | nucleus | 13.03 | 24.71 |
| Solyc01g102300.2.1 | Tomato | nucleus | 35.64 | 24.48 |
| CDY65390 | Canola | nucleus | 10.18 | 23.92 |
| CDX83509 | Canola | nucleus | 19.76 | 23.49 |
| Os05t0139100-01 | Rice | nucleus | 23.83 | 23.17 |
| GSMUA_Achr1P19000_001 | Banana | mitochondrion, nucleus | 27.7 | 22.93 |
| CDY31989 | Canola | nucleus | 22.2 | 22.9 |
| CDY14866 | Canola | nucleus | 18.53 | 22.58 |
| HORVU1Hr1G017900.1 | Barley | nucleus | 22.61 | 22.52 |
| TraesCS1D01G084200.1 | Wheat | nucleus | 23.01 | 22.51 |
| CDX80064 | Canola | nucleus | 18.33 | 22.5 |
| CDX91917 | Canola | nucleus | 15.89 | 22.48 |
| CDX83214 | Canola | nucleus | 15.89 | 22.41 |
| CDY30375 | Canola | nucleus | 18.53 | 22.41 |
| TraesCS1B01G100400.2 | Wheat | nucleus | 22.81 | 22.31 |
| CDY05725 | Canola | nucleus | 23.01 | 22.29 |
| TraesCS1A01G083000.1 | Wheat | nucleus | 23.01 | 22.29 |
| CDY20289 | Canola | nucleus | 9.57 | 22.27 |
| CDY42809 | Canola | nucleus | 18.74 | 22.22 |
| CDY29961 | Canola | nucleus | 18.33 | 22.11 |
| CDX70453 | Canola | nucleus | 18.33 | 22.11 |
| CDY35220 | Canola | nucleus | 16.7 | 22.1 |
| Zm00001d040536_P005 | Maize | nucleus | 25.46 | 22.05 |
| KXG32305 | Sorghum | nucleus | 27.09 | 22.02 |
| CDY06026 | Canola | nucleus | 19.76 | 21.95 |
| CDY66254 | Canola | nucleus | 17.72 | 21.75 |
| CDX71916 | Canola | nucleus | 19.55 | 21.67 |
| CDY44048 | Canola | nucleus, plastid | 14.87 | 21.41 |
| CDY06870 | Canola | nucleus | 19.76 | 21.32 |
| CDX69281 | Canola | nucleus, plastid | 14.87 | 20.92 |
| CDX67873 | Canola | nucleus | 13.03 | 20.85 |
| CDX75629 | Canola | nucleus | 14.66 | 20.81 |
| CDY22448 | Canola | nucleus, plastid | 14.87 | 20.74 |
| CDX74328 | Canola | nucleus | 16.29 | 20.67 |
| Os01t0286100-01 | Rice | nucleus | 26.68 | 20.57 |
| Zm00001d008205_P001 | Maize | nucleus | 26.48 | 20.38 |
| CDY21498 | Canola | nucleus | 15.89 | 20.16 |
| CDY65446 | Canola | nucleus | 13.44 | 19.94 |
| CDY06865 | Canola | nucleus | 14.46 | 19.78 |
| CDX83349 | Canola | nucleus | 16.09 | 19.55 |
| CDY50911 | Canola | nucleus | 10.59 | 19.19 |
| KXG21255 | Sorghum | nucleus | 26.27 | 18.75 |
| CDX68710 | Canola | nucleus | 12.42 | 18.65 |
| CDY28232 | Canola | nucleus | 12.42 | 18.65 |
| CDY06867 | Canola | nucleus | 17.72 | 18.05 |
| CDY55014 | Canola | nucleus | 10.59 | 17.99 |
| CDY11836 | Canola | nucleus | 10.39 | 17.83 |
| CDY02785 | Canola | nucleus | 10.59 | 17.57 |
| CDX88653 | Canola | nucleus | 10.59 | 17.33 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 7.13 | 17.24 |
| CDY32733 | Canola | nucleus | 10.59 | 17.22 |
| CDY62262 | Canola | nucleus | 10.59 | 17.22 |
| CDY46133 | Canola | nucleus | 6.31 | 16.23 |
| CDY34780 | Canola | nucleus | 11.0 | 15.98 |
| CDX76819 | Canola | nucleus | 11.0 | 15.88 |
| CDX76616 | Canola | extracellular | 11.41 | 15.64 |
| CDY11401 | Canola | extracellular | 10.79 | 15.06 |
| CDY21898 | Canola | nucleus | 9.16 | 14.95 |
| CDY18011 | Canola | nucleus | 9.16 | 14.8 |
| CDY22062 | Canola | nucleus | 9.16 | 14.8 |
| CDX91293 | Canola | nucleus | 8.96 | 14.77 |
| CDX97278 | Canola | nucleus | 8.96 | 14.72 |
| CDY35222 | Canola | nucleus | 17.11 | 14.56 |
| CDX90930 | Canola | nucleus | 9.16 | 14.52 |
| CDY18143 | Canola | nucleus | 8.96 | 14.38 |
| CDY46132 | Canola | endoplasmic reticulum | 5.09 | 14.2 |
| CDX89919 | Canola | nucleus | 8.96 | 14.15 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.1.4 | Gene3D:4.10.280.10 | GO:A0A078GBA1 | UniProt:A0A078GBA1 | EnsemblPlants:CDY22636 |
| ProteinID:CDY22636 | ProteinID:CDY22636.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00019305001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF284 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EB8CE4 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC08g42700DBnaC08g42700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBA1]
Coordinates
chrLK032134:-:202079..205252
Molecular Weight (calculated)
53281.4 Da
IEP (calculated)
6.590
GRAVY (calculated)
-0.730
Length
491 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLFELFRLS KAAQDNNTSP PVDEVVELVW ENGQVSTQSR SKNIPPPHQG TSSRPREIGN ASKTTVMDEI PMPVPSLMMG LSQDDDFVPW LNHHHQSLDG
101: YCSDFLQEED MALFQRRNNG NESAPPPPAA ASSSQYNGFQ SHSLYGTDRA REPLVTTSNK PGLINFSHFL RPATLGKSTN NNADRSKEKS PQSPPKVFQT
201: KVLGAKEVLN DSVASAMAKD SQKACLVSED SGRKEQESEK AVVCSSVGSG NSLDGPSESP SLSVKRKHSD VQDIDCHSED VEGESGDGRK EAAPSRTGTG
301: SKRSRSAEVH NLSERRRRDR INEKMRALQE LIPNCNKVDK ASMLDEAIEY LKSLQLQVQI MSMASGYYMP PVMFPPGMGH YPAAAAAMAM GMGMPYAMGL
401: PDMSRAGPSV NHGPQFQVQG MQQPVGMAIP RVSGGGFFTG SSSTMEMNKS DNGSTRDLSG GTKDETTTEN NNGLRPIKRK QTSSDQFCGS S
101: YCSDFLQEED MALFQRRNNG NESAPPPPAA ASSSQYNGFQ SHSLYGTDRA REPLVTTSNK PGLINFSHFL RPATLGKSTN NNADRSKEKS PQSPPKVFQT
201: KVLGAKEVLN DSVASAMAKD SQKACLVSED SGRKEQESEK AVVCSSVGSG NSLDGPSESP SLSVKRKHSD VQDIDCHSED VEGESGDGRK EAAPSRTGTG
301: SKRSRSAEVH NLSERRRRDR INEKMRALQE LIPNCNKVDK ASMLDEAIEY LKSLQLQVQI MSMASGYYMP PVMFPPGMGH YPAAAAAMAM GMGMPYAMGL
401: PDMSRAGPSV NHGPQFQVQG MQQPVGMAIP RVSGGGFFTG SSSTMEMNKS DNGSTRDLSG GTKDETTTEN NNGLRPIKRK QTSSDQFCGS S
001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS
Arabidopsis Description
PIF3Transcription factor PIF3 [Source:UniProtKB/Swiss-Prot;Acc:O80536]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.