Factsheet for Zm00001d024783_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003811_P001
Zm00001d005366_P001
Zm00001d017241_P002
Zm00001d018818_P001
Zm00001d043140_P001
Zm00001d044406_P001
Zm00001d051114_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46970.1	Zm00001d003811_P001	AT5G61380.1	11828029
AT2G46970.1	Zm00001d005366_P001	AT5G61380.1	11828029
AT2G46970.1	Zm00001d017241_P002	AT5G61380.1	11828029
AT2G46970.1	Zm00001d018818_P001	AT5G61380.1	11828029
AT2G46970.1	Zm00001d043140_P001	AT5G61380.1	11828029
AT2G46970.1	Zm00001d044406_P001	AT5G61380.1	11828029
AT2G46970.1	Zm00001d051114_P001	AT5G61380.1	11828029

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG21255	Sorghum	nucleus	81.78	60.03
HORVU1Hr1G017900.1	Barley	nucleus	50.69	51.93
TraesCS1D01G084200.1	Wheat	nucleus	51.09	51.39
TraesCS1B01G100400.2	Wheat	nucleus	50.69	51.0
TraesCS1A01G083000.1	Wheat	nucleus	49.9	49.7
Zm00001d040536_P005	Maize	nucleus	42.97	38.27
VIT_07s0005g02510.t01	Wine grape	nucleus	14.85	37.5
Zm00001d008205_P001	Maize	nucleus	45.54	36.05
KRH69138	Soybean	cytosol, nucleus, vacuole	10.1	28.33
Zm00001d002288_P002	Maize	nucleus	11.09	26.17
Zm00001d026317_P003	Maize	nucleus, plastid	12.08	25.74
CDY22636	Canola	nucleus	24.75	25.46
Bra020017.1-P	Field mustard	nucleus	24.55	25.1
CDY06358	Canola	nucleus	24.36	25.05
Bra031668.1-P	Field mustard	nucleus	24.36	25.0
GSMUA_Achr5P18390_001	Banana	nucleus	29.7	24.75
GSMUA_Achr1P19000_001	Banana	mitochondrion, nucleus	28.91	24.62
CDX94963	Canola	nucleus	24.16	24.5
CDY64745	Canola	nucleus	24.16	24.3
AT1G09530.3	Thale cress	nucleus	24.36	23.47
VIT_14s0060g00260.t01	Wine grape	nucleus	32.28	22.99
CDX67873	Canola	nucleus	13.47	22.15
Bra003483.1-P	Field mustard	nucleus	13.47	22.15
Zm00001d034298_P001	Maize	nucleus	18.42	22.04
Zm00001d018416_P001	Maize	mitochondrion	14.26	21.82
Zm00001d031044_P001	Maize	nucleus	17.23	21.8
KRH33733	Soybean	nucleus	29.5	21.56
AT3G62090.2	Thale cress	nucleus	15.45	21.49
PGSC0003DMT400047079	Potato	nucleus	29.9	21.33
CDX80064	Canola	nucleus	16.83	21.25
Bra004489.1-P	Field mustard	nucleus	16.83	21.25
KRG90443	Soybean	nucleus	30.3	21.19
AT2G46970.1	Thale cress	nucleus	17.43	21.15
KRG96663	Soybean	nucleus	26.34	21.01
KRH33663	Soybean	nucleus	18.61	20.94
CDY65446	Canola	nucleus	13.66	20.85
CDY66254	Canola	nucleus	16.44	20.75
Solyc01g102300.2.1	Tomato	nucleus	29.31	20.7
Zm00001d045212_P001	Maize	nucleus	13.86	20.65
Zm00001d013130_P001	Maize	nucleus	15.64	20.41
KRH68390	Soybean	nucleus	24.95	20.19
Zm00001d033267_P001	Maize	nucleus	21.58	19.89
KRH68348	Soybean	nucleus	19.41	18.96
Zm00001d052038_P001	Maize	nucleus	12.48	18.86
Bra000436.1-P	Field mustard	nucleus	15.05	18.81
CDX83349	Canola	nucleus	15.05	18.81
CDY11401	Canola	extracellular	12.87	18.47
CDY50911	Canola	nucleus	9.9	18.45
CDX76616	Canola	extracellular	13.07	18.44
Zm00001d018374_P001	Maize	nucleus	14.06	18.25
KRG96615	Soybean	nucleus	18.61	18.15
Zm00001d029898_P001	Maize	nucleus	17.23	17.76
Zm00001d018967_P001	Maize	nucleus	9.7	17.19
Zm00001d045107_P001	Maize	nucleus	11.09	16.87
Zm00001d020490_P001	Maize	nucleus	11.49	16.86
Zm00001d013073_P002	Maize	nucleus	9.5	16.84
Zm00001d005750_P002	Maize	mitochondrion	13.07	16.14
Bra007660.1-P	Field mustard	nucleus	13.07	15.64
Zm00001d000291_P001	Maize	nucleus	13.47	14.5
Zm00001d016873_P001	Maize	nucleus	11.68	12.07
Zm00001d045046_P001	Maize	nucleus	10.49	11.02
Zm00001d037098_P003	Maize	nucleus	10.69	10.36
Zm00001d029897_P001	Maize	nucleus	5.15	9.52

Protein Annotations

MapMan:15.5.32	MapMan:26.1.1.4	Gene3D:4.10.280.10	ProteinID:AQK42013.1	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791	GO:GO:0040007
GO:GO:0046983	GO:GO:0080113	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:K7TIH0
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF284	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI0002213DDA	EnsemblPlantsGene:Zm00001d024783	EnsemblPlants:Zm00001d024783_P001	EnsemblPlants:Zm00001d024783_T001	InterPro:bHLH_dom	SEG:seg

Description

bHLH-transcription factor 117Putative HLH DNA-binding domain superfamily protein

Coordinates

chr10:+:87873243..87875642

Molecular Weight (calculated)

52437.1 Da

IEP (calculated)

6.606

GRAVY (calculated)

-0.273

Length

505 amino acids

Sequence
(BLAST)

001: MPVSISICRT GPGEELAELL WDRGPALRRA PPPFQPFTCS AAGSSRSQEL KRHASDTTKA SAFVTAVSVP LGTHDAGSGL GLAGLPVHDD DDAVPWLHCP
101: VADDGDGDTA PLPPEFCAGL LSEYSEVAAP APAFHAAATP PAEAAANKLA PPSAAGGGEG VLNFTFFSRP LQRPQAAAAP AAAAASNPVE STVVQAAANR
201: LRSTPLFSEQ RMAWLQPPKA PRTTAAAAAP PPPPLAPLLP DSRHGETVGT VAQPQPRSQP EARPPDAAAV TTSSVCSGNG GRSQLKRSRH LAADCSVSPD
301: EDLDDEPGAT RRSAARSAKR CRTAEVHNLS ERRRRDRINE KMRALQELIP NCNKVDKSSM LEEAIEYLKT LQLQVQMMSM GTGLCMPPAA MLLPAMQQQL
401: LHHHPMAHFP HLGMGLGFGM GAAAGFDMLP FPCVAAGAHF PCPPGAMFGV PGQAMPSLPA AFAHMYGAGS GAGPAGQTEA ADAAAPARPG EAEQGDQQVQ
501: HAKQT

Best Arabidopsis Sequence Match ( AT1G09530.3 )
(BLAST)

001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS

Arabidopsis Description

PIF3Transcription factor PIF3 [Source:UniProtKB/Swiss-Prot;Acc:O80536]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.