Factsheet for Zm00001d018374_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05953	Sorghum	nucleus	90.23	89.31
Zm00001d052038_P001	Maize	nucleus	67.87	79.04
Zm00001d045107_P001	Maize	nucleus	49.36	57.83
CDY46132	Canola	endoplasmic reticulum	21.08	46.59
CDY20290	Canola	endoplasmic reticulum, extracellular	24.16	46.31
Zm00001d013073_P002	Maize	nucleus	33.16	45.26
Zm00001d020490_P001	Maize	nucleus	38.82	43.9
Zm00001d005750_P002	Maize	mitochondrion	45.24	43.03
Zm00001d018967_P001	Maize	nucleus	31.36	42.81
Zm00001d000291_P001	Maize	nucleus	50.39	41.79
CDY46133	Canola	nucleus	17.48	35.6
Zm00001d016873_P001	Maize	nucleus	32.65	25.97
Zm00001d045046_P001	Maize	nucleus	29.82	24.12
Zm00001d037098_P003	Maize	nucleus	30.33	22.65
Zm00001d002288_P002	Maize	nucleus	12.08	21.96
Zm00001d026317_P003	Maize	nucleus, plastid	11.83	19.41
Zm00001d018416_P001	Maize	mitochondrion	14.4	16.97
Zm00001d045212_P001	Maize	nucleus	14.65	16.81
Zm00001d031044_P001	Maize	nucleus	16.45	16.04
Zm00001d034298_P001	Maize	nucleus	15.42	14.22
Zm00001d013130_P001	Maize	nucleus	14.14	14.21
Zm00001d024783_P001	Maize	nucleus	18.25	14.06
Zm00001d029898_P001	Maize	nucleus	16.2	12.86
Zm00001d033267_P001	Maize	nucleus	17.74	12.59
Zm00001d040536_P005	Maize	nucleus	17.48	11.99
Zm00001d008205_P001	Maize	nucleus	17.48	10.66
Zm00001d029897_P001	Maize	nucleus	3.6	5.13

Protein Annotations

EnsemblPlants:Zm00001d018374_P001	EnsemblPlants:Zm00001d018374_T001	EnsemblPlantsGene:Zm00001d018374	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR16223	PANTHER:PTHR16223:SF28	PFAM:PF00010	PFscan:PS50888	ProteinID:AQK75750.1	SEG:seg
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0008428723	UniProt:A0A1D6HN74	MapMan:15.5.32	:

Description

Transcription factor bHLH69

Coordinates

chr5:+:219467838..219478518

Molecular Weight (calculated)

39607.6 Da

IEP (calculated)

5.595

GRAVY (calculated)

-0.360

Length

389 amino acids

Sequence
(BLAST)

001: MQPSGREMQG GGGAQDDFFD QMLSTLPAAW SDLGSGKSPW ELPAAAGAVT EDTAALDEPA LLASRLRHHQ IGGGEKPLML HLSDLHGLGA GAGDDAGFMP
101: LPLFTQHLAR DDVDAAFKSP NAAGGDRELY NGFGAAGNMH TAAVHQPPPF GQGGSMPAAP QSFGGGGPAP AAGAASGGGA PPRQQRQRAK RGQATDPHSI
201: AERLRRERIA ERMKALQELV PNANKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGATAV GTLVAGIASE GNGSGDGTSD SGKGNAANGE NGGGGSLQVT
301: EQQVARLMEE DMGTAMQYLQ GKGLCLMPIS LASAISSATW PSLLSRPSMG AMGDARGPLH DGGSPASPPL VNCGDDSSTV KDAGAGGKR

Best Arabidopsis Sequence Match ( AT4G30980.2 )
(BLAST)

001: MSKSNPSNLK YYNLHPSFKH HKALNLKRHF NNIHFHSHSP PKKKKTEAMN SSSLLTPSSS PSPHLQSPAT FDHDDFLHHI FSSTPWPSSV LDDTPPPTSD
101: CAPVTGFHHH DADSRNQITM IPLSHNHPND ALFNGFSTGS LPFHLPQGSG GQTQTQSQAT ASATTGGATA QPQTKPKVRA RRGQATDPHS IAERLRRERI
201: AERMKSLQEL VPNGNKTDKA SMLDEIIDYV KFLQLQVKVL SMSRLGGAAS ASSQISEDAG GSHENTSSSG EAKMTEHQVA KLMEEDMGSA MQYLQGKGLC
301: LMPISLATTI STATCPSRSP FVKDTGVPLS PNLSTTIVAN GNGSSLVTVK DAPSVSKP

Arabidopsis Description

LRL2LJRHL1-like 2 [Source:TAIR;Acc:AT4G30980]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.