Factsheet for Zm00001d052038_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018374_P001	Maize	nucleus	79.04	67.87
Zm00001d045107_P001	Maize	nucleus	57.48	57.83
Os02t0795800-00	Rice	endoplasmic reticulum, mitochondrion, nucleus, plastid	38.32	45.71
CDY46132	Canola	endoplasmic reticulum	23.35	44.32
CDY20290	Canola	endoplasmic reticulum, extracellular	26.35	43.35
KRH72281	Soybean	nucleus, plastid	15.57	41.6
Zm00001d000291_P001	Maize	nucleus	51.8	36.89
Zm00001d013073_P002	Maize	nucleus	31.44	36.84
Zm00001d020490_P001	Maize	nucleus	37.72	36.63
Zm00001d005750_P002	Maize	mitochondrion	44.61	36.43
Zm00001d018967_P001	Maize	nucleus	30.54	35.79
CDY46133	Canola	nucleus	14.37	25.13
Zm00001d016873_P001	Maize	nucleus	31.14	21.27
Zm00001d045046_P001	Maize	nucleus	28.14	19.54
Zm00001d037098_P003	Maize	nucleus	28.74	18.43
Zm00001d002288_P002	Maize	nucleus	11.68	18.22
Zm00001d026317_P003	Maize	nucleus, plastid	11.68	16.46
Zm00001d018416_P001	Maize	mitochondrion	14.67	14.85
Zm00001d045212_P001	Maize	nucleus	14.07	13.86
Zm00001d031044_P001	Maize	nucleus	15.87	13.28
Zm00001d013130_P001	Maize	nucleus	14.97	12.92
Zm00001d024783_P001	Maize	nucleus	18.86	12.48
Zm00001d034298_P001	Maize	nucleus	14.67	11.61
Zm00001d029898_P001	Maize	nucleus	16.77	11.43
Zm00001d040536_P005	Maize	nucleus	17.07	10.05
Zm00001d033267_P001	Maize	nucleus	16.47	10.04
Zm00001d008205_P001	Maize	nucleus	17.37	9.09
Zm00001d029897_P001	Maize	nucleus	3.89	4.76

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A1D6QC99	ProteinID:AQK55856.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF28	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000842AE8D	EnsemblPlantsGene:Zm00001d052038	EnsemblPlants:Zm00001d052038_P001	EnsemblPlants:Zm00001d052038_T001	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

bHLH-transcription factor 12Putative HLH DNA-binding domain superfamily protein

Coordinates

chr4:-:177039742..177043438

Molecular Weight (calculated)

34067.1 Da

IEP (calculated)

4.711

GRAVY (calculated)

-0.297

Length

334 amino acids

Sequence
(BLAST)

001: MQPSGREMQG GGGGGGQDDF LDQMLSTLPP AWPDLGYGKS SPWELPAGPD AAAAAAAAFD ETALLASRLR HHQIGGVDEK PLMLHLSDLH GVAAGGGDDA
101: GFMPLPLFTD RAAFKSPNAA GADQALYNGF GAAGMHAAAV HQPPFGQLRR ERIAERMKAL QELVPNANKT DKASMLDEII DYVKFLQLQV KVLSMSRLGG
201: AAAVGPLVAS MASEGDDRAG NGTSDDGGDG ATNGDNGGGG SSLRVTEQQV ARLMEEDMGT AMQYLQGKGL CLMPISLASA ISSSTSSSPP PSLLPRPSVG
301: SVEGARGPLH DDSGGAGGDD GSRTIKYAGA GGKQ

Best Arabidopsis Sequence Match ( AT2G24260.1 )
(BLAST)

001: MMNSSLLTPS SSSSSHIQTP STTFDHEDFL DQIFSSAPWP SVVDDAHPLP SDGFHGHDVD SRNQPIMMMP LNDGSSVHAL YNGFSVAGSL PNFQIPQGSG
101: GGLMNQQGQT QTQTQPQASA STATGGTVAA PPQSRTKIRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNGNKTDKA SMLDEIIDYV KFLQLQVKVL
201: SMSRLGGAAS VSSQISEAGG SHGNASSAMV GGSQTAGNSN DSVTMTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCHSRN PLIPGAVADV
301: GGPSPPNLSG MTIQSTSTKM GSGNGKLNGN GVTERSSSIA VKEAVSVSKA

Arabidopsis Description

BHLH66Transcription factor bHLH66 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.