Factsheet for Zm00001d018416_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005841_P001
Zm00001d020705_P001
Zm00001d031781_P001
Zm00001d035027_P001
Zm00001d049721_P001
Zm00001d050016_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36930.1	Zm00001d005841_P001	AT3G50330.1	17855426
AT4G36930.1	Zm00001d020705_P001	AT3G50330.1	17855426
AT4G36930.1	Zm00001d031781_P001	AT3G50330.1	17855426
AT4G36930.1	Zm00001d050016_P001	AT3G50330.1	17855426
AT4G36930.1	Zm00001d035027_P001	AT5G09750.1	17855426
AT4G36930.1	Zm00001d049721_P001	AT5G09750.1	17855426
AT4G36930.1	Zm00001d005841_P001	AT5G67060.1	17855426
AT4G36930.1	Zm00001d020705_P001	AT5G67060.1	17855426
AT4G36930.1	Zm00001d031781_P001	AT5G67060.1	17855426
AT4G36930.1	Zm00001d050016_P001	AT5G67060.1	17855426

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31309	Sorghum	nucleus	76.36	86.3
Os02t0805250-00	Rice	nucleus	49.7	58.57
CDY37185	Canola	mitochondrion	16.36	55.1
TraesCS6D01G357700.1	Wheat	nucleus	48.48	53.87
TraesCS6B01G411300.1	Wheat	nucleus	48.79	53.14
HORVU6Hr1G088020.4	Barley	nucleus	47.58	53.04
TraesCS6A01G373500.2	Wheat	nucleus	48.48	52.81
KRH04711	Soybean	plastid	16.97	35.0
KRH04595	Soybean	nucleus	26.06	31.62
KRH28453	Soybean	nucleus	26.67	30.24
CDY24734	Canola	plastid	12.42	28.87
AT5G67110.1	Thale cress	nucleus	18.18	28.57
Bra012133.1-P	Field mustard	nucleus, plastid	18.48	28.5
CDY01438	Canola	nucleus, plastid	18.48	27.98
CDY12804	Canola	nucleus, plastid	18.18	27.78
Zm00001d045212_P001	Maize	nucleus	28.48	27.73
KRH05665	Soybean	nucleus	24.55	27.27
KRH15381	Soybean	nucleus	24.24	26.94
Solyc04g078690.2.1	Tomato	nucleus	23.94	25.16
PGSC0003DMT400020534	Potato	nucleus	23.64	24.84
Zm00001d002288_P002	Maize	nucleus	15.76	24.3
CDX75629	Canola	nucleus	25.45	24.28
KRH77016	Soybean	nucleus	27.58	24.27
CDY44048	Canola	nucleus, plastid	24.55	23.75
Bra010591.1-P	Field mustard	nucleus, plastid	24.55	23.75
VIT_07s0031g00450.t01	Wine grape	nucleus, plastid	28.18	23.6
CDY22448	Canola	nucleus, plastid	25.15	23.58
Bra011740.1-P	Field mustard	nucleus, plastid	25.15	23.45
CDX69281	Canola	nucleus, plastid	24.55	23.21
VIT_18s0001g10270.t01	Wine grape	nucleus	25.45	22.76
AT4G36930.1	Thale cress	nucleus	25.45	22.52
PGSC0003DMT400010253	Potato	nucleus	25.15	22.07
Solyc02g093280.2.1	Tomato	nucleus	24.85	21.69
Zm00001d026317_P003	Maize	nucleus, plastid	15.45	21.52
GSMUA_Achr7P20810_001	Banana	nucleus	35.45	19.53
Zm00001d031044_P001	Maize	nucleus	19.39	16.04
Zm00001d034298_P001	Maize	nucleus	20.0	15.64
Zm00001d020490_P001	Maize	nucleus	15.76	15.12
Zm00001d013073_P002	Maize	nucleus	13.03	15.09
Zm00001d018967_P001	Maize	nucleus	12.73	14.74
Zm00001d052038_P001	Maize	nucleus	14.85	14.67
Zm00001d018374_P001	Maize	nucleus	16.97	14.4
Zm00001d024783_P001	Maize	nucleus	21.82	14.26
Zm00001d040536_P005	Maize	nucleus	24.24	14.11
Zm00001d033267_P001	Maize	nucleus	23.03	13.87
Zm00001d005750_P002	Maize	mitochondrion	16.67	13.45
Zm00001d045107_P001	Maize	nucleus	13.33	13.25
Zm00001d013130_P001	Maize	nucleus	15.45	13.18
Zm00001d008205_P001	Maize	nucleus	24.55	12.7
Zm00001d029898_P001	Maize	nucleus	18.79	12.65
Zm00001d000291_P001	Maize	nucleus	16.67	11.73
Zm00001d045046_P001	Maize	nucleus	13.64	9.36
Zm00001d016873_P001	Maize	nucleus	13.64	9.2
Zm00001d037098_P003	Maize	nucleus	14.24	9.02
Zm00001d029897_P001	Maize	nucleus	2.12	2.56

Protein Annotations

EnsemblPlants:Zm00001d018416_P001	EnsemblPlants:Zm00001d018416_T001	EnsemblPlantsGene:Zm00001d018416	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF306	PFAM:PF00010	PFscan:PS50888	ProteinID:AQK75918.1	SEG:seg
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000844E227	UniProt:A0A1D6HNP6	MapMan:15.5.32	:

Description

bHLH-transcription factor 168Transcription factor SPATULA

Coordinates

chr5:-:220300212..220303859

Molecular Weight (calculated)

35323.5 Da

IEP (calculated)

8.302

GRAVY (calculated)

-0.333

Length

330 amino acids

Sequence
(BLAST)

001: MLAAARAKLL CCAVGGGGGS GSGTAAGAVM DAQQQLDLVM RHQSMATVCE SEDALGSSES DPARPARPRG KRSRAAEVHN LSEKRRRSRI NEKMKALQTL
101: IPNSSKTDKA SMLDDAIEYL KHLQLQVQVT KLTPHCSPIS ACFPSFFLQM LSMRNGLYLP PGNLSGAPET LAPLEMCAAL NQSGAKASNS GVVVLPGNKI
201: PVARLLLDPP NHDQRHENPL VLQSVPSSST AVEPRFLQQP AQPNLQSFQL AVPPEMIFDE ADMMLKHRLA SGRETTSLPV GHEAKPGRQE ACMVNSDISN
301: RGSLGKEVFM PYLHSLQSGD TEGGLRAGSN

Best Arabidopsis Sequence Match ( AT4G36930.1 )
(BLAST)

001: MISQREEREE KKQRVMGDKK LISSSSSSSV YDTRINHHLH HPPSSSDEIS QFLRHIFDRS SPLPSYYSPA TTTTTASLIG VHGSGDPHAD NSRSLVSHHP
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT

Arabidopsis Description

SPTSPT [Source:UniProtKB/TrEMBL;Acc:A0A178UVX7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.