Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d050016_P001 | Maize | nucleus | 72.91 | 75.93 |
| EES15124 | Sorghum | nucleus | 74.9 | 69.89 |
| HORVU7Hr1G054880.1 | Barley | nucleus | 56.97 | 64.41 |
| TraesCS7B01G160500.1 | Wheat | nucleus | 56.18 | 63.8 |
| TraesCS7A01G262600.1 | Wheat | nucleus | 55.38 | 63.18 |
| TraesCS7D01G263400.1 | Wheat | nucleus | 55.38 | 63.18 |
| Solyc12g088790.1.1 | Tomato | nucleus | 29.08 | 60.33 |
| Zm00001d020705_P001 | Maize | nucleus | 51.39 | 53.31 |
| PGSC0003DMT400048857 | Potato | nucleus | 30.28 | 51.35 |
| Zm00001d005841_P001 | Maize | nucleus | 46.22 | 47.93 |
| GSMUA_Achr9P15380_001 | Banana | nucleus | 45.42 | 46.53 |
| Bra037128.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 35.46 | 43.41 |
| CDY18636 | Canola | nucleus | 35.46 | 43.41 |
| CDX81342 | Canola | cytoskeleton, cytosol, nucleus | 35.46 | 43.0 |
| Bra036071.1-P | Field mustard | nucleus | 36.26 | 42.72 |
| CDY30593 | Canola | nucleus | 35.86 | 42.25 |
| CDX68583 | Canola | nucleus | 36.65 | 40.53 |
| CDX83121 | Canola | nucleus | 37.05 | 40.43 |
| Bra030002.1-P | Field mustard | nucleus | 37.05 | 40.43 |
| CDY12799 | Canola | nucleus | 35.06 | 40.37 |
| CDY43559 | Canola | nucleus | 37.05 | 40.26 |
| CDY01443 | Canola | nucleus | 35.06 | 40.18 |
| Bra012128.1-P | Field mustard | nucleus | 35.06 | 40.18 |
| CDY63952 | Canola | nucleus | 36.65 | 39.83 |
| Bra036801.1-P | Field mustard | nucleus | 36.65 | 39.83 |
| AT3G50330.1 | Thale cress | nucleus | 36.65 | 39.83 |
| CDY17765 | Canola | nucleus | 35.86 | 39.82 |
| AT5G67060.1 | Thale cress | nucleus | 37.45 | 39.0 |
| KRH77007 | Soybean | nucleus | 38.65 | 38.65 |
| KRH28464 | Soybean | nucleus | 37.05 | 38.43 |
| PGSC0003DMT400010344 | Potato | nucleus | 33.07 | 37.05 |
| KRH57944 | Soybean | nucleus | 35.06 | 34.65 |
| KRH04603 | Soybean | nucleus | 36.65 | 32.62 |
| Zm00001d049721_P001 | Maize | nucleus | 31.47 | 27.53 |
| Zm00001d042988_P001 | Maize | nucleus, plastid | 22.31 | 26.54 |
| Zm00001d042989_P001 | Maize | nucleus, plastid | 22.31 | 26.54 |
| Zm00001d035027_P001 | Maize | nucleus | 31.47 | 23.58 |
| Zm00001d043699_P001 | Maize | nucleus | 29.08 | 17.3 |
| Zm00001d038863_P001 | Maize | nucleus | 26.69 | 16.92 |
| Zm00001d011187_P001 | Maize | nucleus | 28.69 | 16.74 |
| Zm00001d048786_P001 | Maize | nucleus, plastid | 14.34 | 15.45 |
| Zm00001d017804_P001 | Maize | nucleus | 17.93 | 15.25 |
| Zm00001d041351_P001 | Maize | nucleus | 17.93 | 14.8 |
| Zm00001d021988_P001 | Maize | nucleus | 17.13 | 14.58 |
| Zm00001d044242_P001 | Maize | nucleus | 27.49 | 14.35 |
| Zm00001d006733_P001 | Maize | nucleus | 16.33 | 14.34 |
| Zm00001d008444_P001 | Maize | nucleus | 17.13 | 13.23 |
| Zm00001d028085_P001 | Maize | nucleus | 13.15 | 11.15 |
| Zm00001d048141_P001 | Maize | cytosol | 13.55 | 10.76 |
Protein Annotations
| EntrezGene:103643139 | MapMan:15.5.32 | Gene3D:4.10.280.10 | UniProt:A0A060CVJ8 | ProteinID:AIB04481.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| ProteinID:ONM03658.1 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF74 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0002214700 | EnsemblPlantsGene:Zm00001d031781 | EnsemblPlants:Zm00001d031781_P001 | EnsemblPlants:Zm00001d031781_T001 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
bHLH-transcription factor 135Transcription factor HEC2
Coordinates
chr1:+:201578936..201579691
Molecular Weight (calculated)
26914.9 Da
IEP (calculated)
9.199
GRAVY (calculated)
-0.452
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLDMLNSHP EAQLELMNAM LQLEQLAGFP LHDHGGAIMM AVPSTPPSPP PPPGMQQQAA THHHHLSSVP RHMSAGATAN NNGRAGVYDD HQYPRQVRVT
101: AASSSSCSCN DGGSSGEISA TAAAAVGSSS SSSAMREMVF RVAALQPVNI EPEMVRPPKR RNARISTDPQ SVAARVRRER ISERIRVLQR LVPGGTKMDT
201: ASMLDEAIHY VKFLKTQVQS LERAAAADAR RPVPDNGGAA PYSSARINGQ W
101: AASSSSCSCN DGGSSGEISA TAAAAVGSSS SSSAMREMVF RVAALQPVNI EPEMVRPPKR RNARISTDPQ SVAARVRRER ISERIRVLQR LVPGGTKMDT
201: ASMLDEAIHY VKFLKTQVQS LERAAAADAR RPVPDNGGAA PYSSARINGQ W
001: MDSDIMNMMM HQMEKLPEFC NPNSSFFSPD HNNTYPFLFN STHYQSDHSM TNEPGFRYGS GLLTNPSSIS PNTAYSSVFL DKRNNSNNNN NGTNMAAMRE
101: MIFRIAVMQP IHIDPEAVKP PKRRNVRISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQSLEEQAVV TGGGGGGGGR
201: VLIGGGGMTA ASGGGGGGGV VMKGCGTVGT HQMVGNAQIL R
101: MIFRIAVMQP IHIDPEAVKP PKRRNVRISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQSLEEQAVV TGGGGGGGGR
201: VLIGGGGMTA ASGGGGGGGV VMKGCGTVGT HQMVGNAQIL R
Arabidopsis Description
HEC1HEC1 [Source:UniProtKB/TrEMBL;Acc:A0A178UR10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.