Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400010253 | |
| PGSC0003DMT400010344 | |
| PGSC0003DMT400048857 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G50330.1 | PGSC0003DMT400010344 | AT3G50330.1 | 21798944 |
| AT3G50330.1 | PGSC0003DMT400048857 | AT3G50330.1 | 21798944 |
| AT3G50330.1 | PGSC0003DMT400010253 | AT4G36930.1 | 17855426 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g090950.1.1 | Tomato | nucleus | 94.2 | 95.05 |
| PGSC0003DMT400048857 | Potato | nucleus | 41.07 | 62.16 |
| Bra037128.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 45.09 | 49.27 |
| CDY18636 | Canola | nucleus | 45.09 | 49.27 |
| CDX81342 | Canola | cytoskeleton, cytosol, nucleus | 45.09 | 48.79 |
| Bra036071.1-P | Field mustard | nucleus | 44.64 | 46.95 |
| CDY12799 | Canola | nucleus | 45.54 | 46.79 |
| Bra012128.1-P | Field mustard | nucleus | 45.54 | 46.58 |
| CDY01443 | Canola | nucleus | 45.54 | 46.58 |
| CDY30593 | Canola | nucleus | 44.2 | 46.48 |
| Bra036801.1-P | Field mustard | nucleus | 47.77 | 46.32 |
| CDY43559 | Canola | nucleus | 47.77 | 46.32 |
| CDY63952 | Canola | nucleus | 47.77 | 46.32 |
| CDX68583 | Canola | nucleus | 45.98 | 45.37 |
| Bra030002.1-P | Field mustard | nucleus | 45.98 | 44.78 |
| CDX83121 | Canola | nucleus | 45.98 | 44.78 |
| CDY17765 | Canola | nucleus | 45.09 | 44.69 |
| KRH28464 | Soybean | nucleus | 47.77 | 44.21 |
| AT3G50330.1 | Thale cress | nucleus | 45.54 | 44.16 |
| AT5G67060.1 | Thale cress | nucleus | 46.88 | 43.57 |
| KRH77007 | Soybean | nucleus | 47.77 | 42.63 |
| PGSC0003DMT400020558 | Potato | nucleus | 45.98 | 40.71 |
| HORVU7Hr1G054880.1 | Barley | nucleus | 39.73 | 40.09 |
| TraesCS7A01G262600.1 | Wheat | nucleus | 39.29 | 40.0 |
| TraesCS7B01G160500.1 | Wheat | nucleus | 39.29 | 39.82 |
| KRH57944 | Soybean | nucleus | 45.09 | 39.76 |
| TraesCS7D01G263400.1 | Wheat | nucleus | 38.84 | 39.55 |
| KRH04603 | Soybean | nucleus | 48.21 | 38.3 |
| Os09t0455300-01 | Rice | nucleus | 39.73 | 37.71 |
| Zm00001d050016_P001 | Maize | nucleus | 40.18 | 37.34 |
| Zm00001d020705_P001 | Maize | nucleus | 39.29 | 36.36 |
| TraesCS5D01G244000.1 | Wheat | nucleus | 37.95 | 36.17 |
| TraesCS5A01G237500.1 | Wheat | nucleus | 37.95 | 36.17 |
| HORVU5Hr1G068110.1 | Barley | nucleus | 38.39 | 36.13 |
| TraesCS5B01G235200.1 | Wheat | nucleus | 37.5 | 35.74 |
| TraesCS6A01G142000.1 | Wheat | nucleus | 37.5 | 35.74 |
| GSMUA_Achr9P15380_001 | Banana | nucleus | 37.95 | 34.69 |
| Zm00001d005841_P001 | Maize | nucleus | 36.61 | 33.88 |
| EES15124 | Sorghum | nucleus | 40.62 | 33.83 |
| EER96848 | Sorghum | nucleus | 39.29 | 33.72 |
| Zm00001d031781_P001 | Maize | nucleus | 37.05 | 33.07 |
| PGSC0003DMT400073760 | Potato | nucleus | 33.04 | 28.24 |
| PGSC0003DMT400008370 | Potato | nucleus | 17.41 | 19.7 |
| PGSC0003DMT400006453 | Potato | nucleus | 30.8 | 17.88 |
| PGSC0003DMT400012487 | Potato | nucleus | 29.02 | 16.67 |
| PGSC0003DMT400030165 | Potato | nucleus | 12.5 | 15.38 |
| PGSC0003DMT400089728 | Potato | nucleus | 17.86 | 13.11 |
| PGSC0003DMT400055446 | Potato | nucleus | 20.98 | 13.02 |
| PGSC0003DMT400087143 | Potato | nucleus | 19.2 | 12.91 |
| PGSC0003DMT400078776 | Potato | nucleus | 17.41 | 12.3 |
Protein Annotations
| EntrezGene:102579254 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M0ZXV9 |
| PFAM:PF00010 | EnsemblPlantsGene:PGSC0003DMG400004039 | PGSC:PGSC0003DMG400004039 | EnsemblPlants:PGSC0003DMT400010344 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF74 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000294F709 | RefSeq:XP_006339941.1 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004039]
Coordinates
chr2:-:43755182..43756240
Molecular Weight (calculated)
24960.2 Da
IEP (calculated)
9.960
GRAVY (calculated)
-0.456
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MELQNIAHSL ELGFSNSNIE MIPLQPPLHN SNYLMTSPPS NFSFMGNPIE EPAAMPILSS IDEIIASAAH GSGNDYSCLQ RRNSMEAMRE MIFRIAMMQP
101: IHIDPESVKP PKRKNVKISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA VHYVKFLKKQ LQSLEQAAVN NRPMISGFST AMSSPGPMNY
201: NSSSIRACQP HPSMNSSAQN AKLK
101: IHIDPESVKP PKRKNVKISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA VHYVKFLKKQ LQSLEQAAVN NRPMISGFST AMSSPGPMNY
201: NSSSIRACQP HPSMNSSAQN AKLK
001: MDNSDILMNM MMQQMEKLPE HFSNSNPNPN PHNIMMLSES NTHPFFFNPT HSHLPFDQTM PHHQPGLNFR YAPSPSSSLP EKRGGCSDNA NMAAMREMIF
101: RIAVMQPIHI DPESVKPPKR KNVRISKDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKKQVQS LEEHAVVNGG GMTAVAGGAL
201: AGTVGGGYGG KGCGIMRSDH HQMLGNAQIL R
101: RIAVMQPIHI DPESVKPPKR KNVRISKDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKKQVQS LEEHAVVNGG GMTAVAGGAL
201: AGTVGGGYGG KGCGIMRSDH HQMLGNAQIL R
Arabidopsis Description
HEC2Transcription factor HEC2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SND4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.