Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g078790.2.1 | Tomato | nucleus | 92.89 | 95.53 |
| PGSC0003DMT400048857 | Potato | nucleus | 33.2 | 56.76 |
| VIT_18s0001g10400.t01 | Wine grape | nucleus | 51.78 | 52.82 |
| VIT_07s0031g00550.t01 | Wine grape | nucleus | 51.38 | 51.59 |
| GSMUA_Achr9P29130_001 | Banana | nucleus | 30.04 | 49.67 |
| PGSC0003DMT400010344 | Potato | nucleus | 40.71 | 45.98 |
| GSMUA_Achr10P... | Banana | nucleus | 41.9 | 43.8 |
| KRH61303 | Soybean | nucleus | 45.06 | 43.18 |
| PGSC0003DMT400073760 | Potato | nucleus | 31.62 | 30.53 |
| PGSC0003DMT400012487 | Potato | nucleus | 30.43 | 19.74 |
| PGSC0003DMT400008370 | Potato | nucleus | 15.41 | 19.7 |
| PGSC0003DMT400006453 | Potato | nucleus | 29.64 | 19.43 |
| PGSC0003DMT400030165 | Potato | nucleus | 11.46 | 15.93 |
| PGSC0003DMT400089728 | Potato | nucleus | 18.58 | 15.41 |
| PGSC0003DMT400087143 | Potato | nucleus | 19.37 | 14.71 |
| PGSC0003DMT400055446 | Potato | nucleus | 20.95 | 14.68 |
| PGSC0003DMT400078776 | Potato | nucleus | 17.79 | 14.2 |
Protein Annotations
| EntrezGene:102592363 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M1ADQ0 |
| PFAM:PF00010 | EnsemblPlantsGene:PGSC0003DMG400007964 | PGSC:PGSC0003DMG400007964 | EnsemblPlants:PGSC0003DMT400020558 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF74 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000296A3AA | RefSeq:XP_006354949.1 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007964]
Coordinates
chr4:+:68073160..68074459
Molecular Weight (calculated)
28319.7 Da
IEP (calculated)
9.043
GRAVY (calculated)
-0.564
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIDMLKSSA ASEDQMEMML MMQLEKFPDF YTGNCSELPM MEFSPQGSCN SSNNNNNNYN FQQIDQNSPN FLNMPSTISF TNSPPIHQNP NFLPNSGGFT
101: SNSMNRSNMA AMREMIFRIA AMQPINIDPE SVKPPKRRNV KISTDPQSIA ARHRRERISE RIRILQRLVP GGTKMDTASM LDEAIHYVKF LKNQVQSLER
201: AGATRPANGT AVTAAAAAGL GFPVPMSLSG NYYNLPVSSK NYHHQNIQRY ADV
101: SNSMNRSNMA AMREMIFRIA AMQPINIDPE SVKPPKRRNV KISTDPQSIA ARHRRERISE RIRILQRLVP GGTKMDTASM LDEAIHYVKF LKNQVQSLER
201: AGATRPANGT AVTAAAAAGL GFPVPMSLSG NYYNLPVSSK NYHHQNIQRY ADV
001: MDSDIMNMMM HQMEKLPEFC NPNSSFFSPD HNNTYPFLFN STHYQSDHSM TNEPGFRYGS GLLTNPSSIS PNTAYSSVFL DKRNNSNNNN NGTNMAAMRE
101: MIFRIAVMQP IHIDPEAVKP PKRRNVRISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQSLEEQAVV TGGGGGGGGR
201: VLIGGGGMTA ASGGGGGGGV VMKGCGTVGT HQMVGNAQIL R
101: MIFRIAVMQP IHIDPEAVKP PKRRNVRISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQSLEEQAVV TGGGGGGGGR
201: VLIGGGGMTA ASGGGGGGGV VMKGCGTVGT HQMVGNAQIL R
Arabidopsis Description
HEC1HEC1 [Source:UniProtKB/TrEMBL;Acc:A0A178UR10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.