Factsheet for PGSC0003DMT400087143

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g107140.1.1	Tomato	nucleus	93.69	94.55
PGSC0003DMT400008370	Potato	nucleus	34.53	58.08
PGSC0003DMT400089728	Potato	nucleus	49.85	54.43
PGSC0003DMT400030165	Potato	nucleus	23.72	43.41
GSMUA_Achr2P17130_001	Banana	nucleus	38.44	40.51
EER99632	Sorghum	nucleus	33.03	39.01
Bra034587.1-P	Field mustard	nucleus	40.24	38.73
CDX72435	Canola	nucleus	40.54	38.57
AT2G14760.3	Thale cress	nucleus	39.34	38.42
Zm00001d021988_P001	Maize	nucleus	33.93	38.31
Bra036969.1-P	Field mustard	nucleus	40.24	38.29
CDX69011	Canola	nucleus	39.64	38.04
CDY49379	Canola	nucleus	39.94	38.0
PGSC0003DMT400055446	Potato	nucleus	41.14	37.95
CDY28328	Canola	nucleus	40.54	37.92
Zm00001d006733_P001	Maize	nucleus	32.43	37.76
AT4G33880.1	Thale cress	nucleus	39.64	37.5
CDX75386	Canola	nucleus	39.04	37.46
Os07t0588400-00	Rice	nucleus	33.03	37.29
Bra011476.1-P	Field mustard	nucleus	38.74	37.18
CDY37221	Canola	nucleus	37.84	36.42
CDX81461	Canola	nucleus	37.84	36.42
Bra039819.1-P	Field mustard	nucleus	37.54	36.13
CDY48431	Canola	nucleus	29.43	30.53
PGSC0003DMT400048857	Potato	nucleus	12.31	27.7
PGSC0003DMT400020558	Potato	nucleus	14.71	19.37
PGSC0003DMT400010344	Potato	nucleus	12.91	19.2
PGSC0003DMT400078776	Potato	nucleus	17.42	18.3
PGSC0003DMT400073760	Potato	nucleus	12.01	15.27
PGSC0003DMT400006453	Potato	nucleus	16.82	14.51
PGSC0003DMT400012487	Potato	nucleus	16.52	14.1

Protein Annotations

EnsemblPlants:PGSC0003DMT400087143	EnsemblPlantsGene:PGSC0003DMG400036714	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR16223
PANTHER:PTHR16223:SF105	PFAM:PF00010	PFscan:PS50888	PGSC:PGSC0003DMG400036714	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000295D215	UniProt:M1DD90	MapMan:15.5.32	:	:

Description

Basic helix-loop-helix protein BHLH10 [Source:PGSC_GENE;Acc:PGSC0003DMG400036714]

Coordinates

chr1:-:83643089..83644421

Molecular Weight (calculated)

36915.8 Da

IEP (calculated)

5.090

GRAVY (calculated)

-0.708

Length

333 amino acids

Sequence
(BLAST)

001: MEPVVAMSEG EWSSLSGTCS TEEANFMAQL FGTCPNEQLP SSGLPIFWTN HESNIGGTSE VSIFSSQDTN SSIYHFSTST NNFQPMLLRN NNTSMTMEQS
101: SHLPPTNNLI EADAVEFLNK QVSNDSIESG ENIMSESVLH GKSLQLGREY DQMQQSESSK KRSRSPVDHK NKRSVKPKKS SVADDEETGN NNNNNNTVLH
201: RQSSFSCCSE DESNVSSYDL YGLASSDNNS KGVSLPNGKS RANRGSATDP QSLYARKRRE RINERLRILQ SLVPNGTKVD ISTMLEEAVQ YVKFLQLQIK
301: LLSSDDLWMY SPIAYNGMDI GLDLKIGIPN PKS

Best Arabidopsis Sequence Match ( AT2G14760.1 )
(BLAST)

001: MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSSSET TATLTAYHHQ GSQWNGGFCF SQESSSYSGY CAAMPRQEED NNGMEDATIN TNLYLVGEET
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR

Arabidopsis Description

Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IGG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.