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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400087143 Potato nucleus 94.55 93.69
Solyc10g049720.1.1 Tomato nucleus 49.09 54.36
Solyc10g049780.1.1 Tomato nucleus 41.52 50.37
GSMUA_Achr2P17130_001 Banana nucleus 39.09 40.82
EER99632 Sorghum nucleus 33.64 39.36
Zm00001d021988_P001 Maize nucleus 34.24 38.31
Zm00001d006733_P001 Maize nucleus 32.73 37.76
Solyc04g077960.1.1 Tomato nucleus 40.61 37.75
Os07t0588400-00 Rice nucleus 33.64 37.63
Bra034587.1-P Field mustard nucleus 39.39 37.57
CDX72435 Canola nucleus 39.7 37.43
AT2G14760.3 Thale cress nucleus 38.48 37.24
Bra036969.1-P Field mustard nucleus 39.39 37.14
AT4G33880.1 Thale cress nucleus 39.39 36.93
CDX69011 Canola nucleus 38.79 36.89
CDY49379 Canola nucleus 39.09 36.86
CDY28328 Canola nucleus 39.7 36.8
CDX75386 Canola nucleus 38.48 36.6
Bra011476.1-P Field mustard nucleus 38.18 36.31
Solyc12g088380.1.1 Tomato nucleus 30.3 36.1
CDX81461 Canola nucleus 37.27 35.55
Bra039819.1-P Field mustard nucleus 36.97 35.26
CDY37221 Canola nucleus 36.97 35.26
Solyc12g088790.1.1 Tomato nucleus 11.21 30.58
CDY48431 Canola nucleus 28.48 29.28
Solyc03g044460.1.1 Tomato nucleus 12.12 27.4
Solyc09g005070.1.1 Tomato nucleus 12.12 27.03
Solyc04g078790.2.1 Tomato nucleus 14.85 19.92
Solyc02g091440.1.1 Tomato nucleus 18.48 19.24
Solyc02g090950.1.1 Tomato nucleus 12.73 18.92
Solyc11g005780.1.1 Tomato nucleus 13.03 15.19
Solyc03g121240.1.1 Tomato nucleus 16.97 14.74
Solyc06g062460.2.1 Tomato nucleus 16.06 13.55
Protein Annotations
MapMan:15.5.32Gene3D:4.10.280.10GO:GO:0001046GO:GO:0001228GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006366GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0045944GO:GO:0046983InterPro:HLH_DNA-bd_sfInterPro:IPR011598
InterPro:IPR036638UniProt:K4B2T1PFAM:PF00010PFscan:PS50888PANTHER:PTHR16223PANTHER:PTHR16223:SF105
SMART:SM00353SUPFAM:SSF47459EnsemblPlantsGene:Solyc01g107140.1EnsemblPlants:Solyc01g107140.1.1UniParc:UPI0002767AB0InterPro:bHLH_dom
SEG:seg:::::
Description
No Description!
Coordinates
chr1:-:94753048..94754417
Molecular Weight (calculated)
36666.7 Da
IEP (calculated)
5.798
GRAVY (calculated)
-0.695
Length
330 amino acids
Sequence
(BLAST)
001: MEPVVAMSEG EWSSLSGTCS TEEANFMAQL FGACPNEQQL PSSGLPNFWT NHESNIGGSS EVSIFSSQHH TNSSIYHFPT STNHFQPMLL TTSMTMEHLP
101: PTNNLIEADA VEFLNKQVNN DSIESGENIM SESVLHGKSL QLGREYDQMH QPESSKKRSQ SPVDHKNKRS VKPKKNMKSS VADDEETGNN NNNNTVLHRQ
201: SSFSCCSEDE SNVSSYDIYG LASSDNSKGV SLPNGKSRAN RGSATDPQSL YARKRRERIN ERLRILQSLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYSPI AYNGMDIGLD LKIGIPNPKP
Best Arabidopsis Sequence Match ( AT2G14760.1 )
(BLAST)
001: MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSSSET TATLTAYHHQ GSQWNGGFCF SQESSSYSGY CAAMPRQEED NNGMEDATIN TNLYLVGEET
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IGG9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.