Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400087143 | Potato | nucleus | 94.55 | 93.69 |
Solyc10g049720.1.1 | Tomato | nucleus | 49.09 | 54.36 |
Solyc10g049780.1.1 | Tomato | nucleus | 41.52 | 50.37 |
GSMUA_Achr2P17130_001 | Banana | nucleus | 39.09 | 40.82 |
EER99632 | Sorghum | nucleus | 33.64 | 39.36 |
Zm00001d021988_P001 | Maize | nucleus | 34.24 | 38.31 |
Zm00001d006733_P001 | Maize | nucleus | 32.73 | 37.76 |
Solyc04g077960.1.1 | Tomato | nucleus | 40.61 | 37.75 |
Os07t0588400-00 | Rice | nucleus | 33.64 | 37.63 |
Bra034587.1-P | Field mustard | nucleus | 39.39 | 37.57 |
CDX72435 | Canola | nucleus | 39.7 | 37.43 |
AT2G14760.3 | Thale cress | nucleus | 38.48 | 37.24 |
Bra036969.1-P | Field mustard | nucleus | 39.39 | 37.14 |
AT4G33880.1 | Thale cress | nucleus | 39.39 | 36.93 |
CDX69011 | Canola | nucleus | 38.79 | 36.89 |
CDY49379 | Canola | nucleus | 39.09 | 36.86 |
CDY28328 | Canola | nucleus | 39.7 | 36.8 |
CDX75386 | Canola | nucleus | 38.48 | 36.6 |
Bra011476.1-P | Field mustard | nucleus | 38.18 | 36.31 |
Solyc12g088380.1.1 | Tomato | nucleus | 30.3 | 36.1 |
CDX81461 | Canola | nucleus | 37.27 | 35.55 |
Bra039819.1-P | Field mustard | nucleus | 36.97 | 35.26 |
CDY37221 | Canola | nucleus | 36.97 | 35.26 |
Solyc12g088790.1.1 | Tomato | nucleus | 11.21 | 30.58 |
CDY48431 | Canola | nucleus | 28.48 | 29.28 |
Solyc03g044460.1.1 | Tomato | nucleus | 12.12 | 27.4 |
Solyc09g005070.1.1 | Tomato | nucleus | 12.12 | 27.03 |
Solyc04g078790.2.1 | Tomato | nucleus | 14.85 | 19.92 |
Solyc02g091440.1.1 | Tomato | nucleus | 18.48 | 19.24 |
Solyc02g090950.1.1 | Tomato | nucleus | 12.73 | 18.92 |
Solyc11g005780.1.1 | Tomato | nucleus | 13.03 | 15.19 |
Solyc03g121240.1.1 | Tomato | nucleus | 16.97 | 14.74 |
Solyc06g062460.2.1 | Tomato | nucleus | 16.06 | 13.55 |
Protein Annotations
MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:GO:0001046 | GO:GO:0001228 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006366 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
InterPro:IPR036638 | UniProt:K4B2T1 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR16223 | PANTHER:PTHR16223:SF105 |
SMART:SM00353 | SUPFAM:SSF47459 | EnsemblPlantsGene:Solyc01g107140.1 | EnsemblPlants:Solyc01g107140.1.1 | UniParc:UPI0002767AB0 | InterPro:bHLH_dom |
SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:94753048..94754417
Molecular Weight (calculated)
36666.7 Da
IEP (calculated)
5.798
GRAVY (calculated)
-0.695
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPVVAMSEG EWSSLSGTCS TEEANFMAQL FGACPNEQQL PSSGLPNFWT NHESNIGGSS EVSIFSSQHH TNSSIYHFPT STNHFQPMLL TTSMTMEHLP
101: PTNNLIEADA VEFLNKQVNN DSIESGENIM SESVLHGKSL QLGREYDQMH QPESSKKRSQ SPVDHKNKRS VKPKKNMKSS VADDEETGNN NNNNTVLHRQ
201: SSFSCCSEDE SNVSSYDIYG LASSDNSKGV SLPNGKSRAN RGSATDPQSL YARKRRERIN ERLRILQSLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYSPI AYNGMDIGLD LKIGIPNPKP
101: PTNNLIEADA VEFLNKQVNN DSIESGENIM SESVLHGKSL QLGREYDQMH QPESSKKRSQ SPVDHKNKRS VKPKKNMKSS VADDEETGNN NNNNTVLHRQ
201: SSFSCCSEDE SNVSSYDIYG LASSDNSKGV SLPNGKSRAN RGSATDPQSL YARKRRERIN ERLRILQSLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYSPI AYNGMDIGLD LKIGIPNPKP
001: MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSSSET TATLTAYHHQ GSQWNGGFCF SQESSSYSGY CAAMPRQEED NNGMEDATIN TNLYLVGEET
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IGG9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.