Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400048857 | Potato | nucleus | 81.51 | 80.41 |
| Solyc12g088790.1.1 | Tomato | nucleus | 52.05 | 62.81 |
| Solyc02g090950.1.1 | Tomato | nucleus | 63.7 | 41.89 |
| Solyc04g078790.2.1 | Tomato | nucleus | 58.22 | 34.55 |
| GSMUA_Achr9P15380_001 | Banana | nucleus | 52.74 | 31.43 |
| Solyc09g005070.1.1 | Tomato | nucleus | 26.71 | 26.35 |
| Solyc11g005780.1.1 | Tomato | nucleus | 47.95 | 24.73 |
| Solyc03g121240.1.1 | Tomato | nucleus | 41.78 | 16.05 |
| Solyc06g062460.2.1 | Tomato | nucleus | 41.1 | 15.35 |
| Solyc10g049780.1.1 | Tomato | nucleus | 24.66 | 13.24 |
| Solyc10g049720.1.1 | Tomato | nucleus | 26.03 | 12.75 |
| Solyc02g091440.1.1 | Tomato | nucleus | 26.71 | 12.3 |
| Solyc01g107140.1.1 | Tomato | nucleus | 27.4 | 12.12 |
| Solyc04g077960.1.1 | Tomato | nucleus | 28.77 | 11.83 |
| Solyc12g088380.1.1 | Tomato | nucleus | 16.44 | 8.66 |
Protein Annotations
| EnsemblPlants:Solyc03g044460.1.1 | EnsemblPlantsGene:Solyc03g044460.1 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF74 | PFAM:PF00010 | PFscan:PS50888 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI0002768347 | UniProt:K4BG65 | MapMan:15.5.32 | : | : | : |
Description
No Description!
Coordinates
chr3:+:9298554..9298994
Molecular Weight (calculated)
16759.5 Da
IEP (calculated)
10.248
GRAVY (calculated)
-0.517
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLNEITQSI NNIEMIQLLP IHNSSSIDHV IMREMIFGIA MMQPIKIDPE SVKPPKRKNV KISKDPRSVA ARHRREKISE KIRILQRLVP GGTKMDTASM
101: LDEAVHYVKF LKKQLKSLEQ ATTACSNDRN NNRFVSGFNQ CPHNCY
101: LDEAVHYVKF LKKQLKSLEQ ATTACSNDRN NNRFVSGFNQ CPHNCY
001: MEKLPEFCNP NSSFFSPDHN NTYPFLFNST HYQSDHSMTN EPGFRYGSGL LTNPSSISPN TAYSSVFLDK RNNSNNNNNG TNMAAMREMI FRIAVMQPIH
101: IDPEAVKPPK RRNVRISKDP QSVAARHRRE RISERIRILQ RLVPGGTKMD TASMLDEAIH YVKFLKKQVQ SLEEQAVVTG GGGGGGGRVL IGGGGMTAAS
201: GGGGGGGVVM KGCGTVGTHQ MVGNAQILR
101: IDPEAVKPPK RRNVRISKDP QSVAARHRRE RISERIRILQ RLVPGGTKMD TASMLDEAIH YVKFLKKQVQ SLEEQAVVTG GGGGGGGRVL IGGGGMTAAS
201: GGGGGGGVVM KGCGTVGTHQ MVGNAQILR
Arabidopsis Description
HEC1HEC1 [Source:UniProtKB/TrEMBL;Acc:A0A178UR10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.