Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400012487 | Potato | nucleus | 90.28 | 90.51 |
| Solyc12g088790.1.1 | Tomato | nucleus | 14.83 | 47.93 |
| Solyc03g044460.1.1 | Tomato | nucleus | 15.35 | 41.1 |
| Solyc03g121240.1.1 | Tomato | nucleus | 36.32 | 37.37 |
| Solyc04g078790.2.1 | Tomato | nucleus | 19.95 | 31.71 |
| Solyc02g090950.1.1 | Tomato | nucleus | 17.9 | 31.53 |
| Solyc09g005070.1.1 | Tomato | nucleus | 9.97 | 26.35 |
| Solyc11g005780.1.1 | Tomato | nucleus | 16.11 | 22.26 |
| Solyc04g077960.1.1 | Tomato | nucleus | 16.62 | 18.31 |
| Solyc10g049780.1.1 | Tomato | nucleus | 11.25 | 16.18 |
| Solyc10g049720.1.1 | Tomato | nucleus | 12.28 | 16.11 |
| Solyc01g107140.1.1 | Tomato | nucleus | 13.55 | 16.06 |
| Solyc02g091440.1.1 | Tomato | nucleus | 12.28 | 15.14 |
| Solyc12g088380.1.1 | Tomato | nucleus | 10.49 | 14.8 |
Protein Annotations
| EnsemblPlants:Solyc06g062460.2.1 | EnsemblPlantsGene:Solyc06g062460.2 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF293 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI0002766767 | UniProt:K4C6X7 | MapMan:15.5.32 | : | : | : |
Description
No Description!
Coordinates
chr6:-:39407557..39409704
Molecular Weight (calculated)
43277.4 Da
IEP (calculated)
6.177
GRAVY (calculated)
-0.524
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFQEFGAAF DPIDILSSWN ISQRQEAATR LAADSVAAKS GAGSIGDCSK RKIDSSSSNF PPGNNYLPYF GNNQVPVCSL MADLSSISLF SKTKSPNCLL
101: SATNTSNTDT SGELDDVIFS DDSESLWNIH TSNVVSSGES AIDAYKSKPI DADDNNDIHY SVNQLHATVS CNNLIRSSEA KYYNMDKRSH DALLESDSSN
201: RDYVIQLISE NDQPKSKKSR SEYKLPSSSN INFQQASSSA CSIVDRDSEA IAQMKEMIYR AAAFRPVSSV TEDVMVEKPK RKNVRISMDP QTAAARRRRE
301: KISERIRILQ KLVPGGSNMD TASMLDEAAN YLKFLRTQVN AFESFGFNID PSITNNNFTT SLSSIPLINY PFPLQPHFPM QNLNPVHHPK C
101: SATNTSNTDT SGELDDVIFS DDSESLWNIH TSNVVSSGES AIDAYKSKPI DADDNNDIHY SVNQLHATVS CNNLIRSSEA KYYNMDKRSH DALLESDSSN
201: RDYVIQLISE NDQPKSKKSR SEYKLPSSSN INFQQASSSA CSIVDRDSEA IAQMKEMIYR AAAFRPVSSV TEDVMVEKPK RKNVRISMDP QTAAARRRRE
301: KISERIRILQ KLVPGGSNMD TASMLDEAAN YLKFLRTQVN AFESFGFNID PSITNNNFTT SLSSIPLINY PFPLQPHFPM QNLNPVHHPK C
001: MEGLESVYAQ AMYGMTRESK IMEHQGSDLI WGGNELMARE LCSSSSYHHQ LINPNLSSCF MSDLGVLGEI QQQQHVGNRA SSIDPSSLDC LLSATSNSNN
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
Arabidopsis Description
BHLH87Transcription factor bHLH87 [Source:UniProtKB/Swiss-Prot;Acc:Q8S3D2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.