Factsheet for GSMUA_Achr9P15380_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr7P20810_001
GSMUA_Achr8P15670_001
GSMUA_Achr9P11300_001
GSMUA_Achr9P15380_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50330.1	GSMUA_Achr9P15380_001	AT3G50330.1	21798944
AT3G50330.1	GSMUA_Achr10P...	AT4G36930.1	17855426
AT3G50330.1	GSMUA_Achr7P20810_001	AT4G36930.1	17855426
AT3G50330.1	GSMUA_Achr8P15670_001	AT4G36930.1	17855426
AT3G50330.1	GSMUA_Achr9P11300_001	AT4G36930.1	17855426

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P18580_001	Banana	cytosol	28.57	57.38
GSMUA_Achr8P23350_001	Banana	nucleus	33.47	52.9
Solyc03g044460.1.1	Tomato	nucleus	31.43	52.74
TraesCS5D01G244000.1	Wheat	nucleus	50.2	52.34
TraesCS7D01G263400.1	Wheat	nucleus	46.94	52.27
TraesCS7A01G262600.1	Wheat	nucleus	46.94	52.27
PGSC0003DMT400048857	Potato	nucleus	31.43	52.03
TraesCS5A01G237500.1	Wheat	nucleus	49.8	51.91
TraesCS5B01G235200.1	Wheat	nucleus	49.8	51.91
TraesCS6A01G142000.1	Wheat	nucleus	49.8	51.91
Os09t0455300-01	Rice	nucleus	49.8	51.69
TraesCS7B01G160500.1	Wheat	nucleus	46.12	51.13
HORVU7Hr1G054880.1	Barley	nucleus	46.12	50.9
HORVU5Hr1G068110.1	Barley	nucleus	49.39	50.84
Zm00001d050016_P001	Maize	nucleus	47.76	48.55
Zm00001d020705_P001	Maize	nucleus	46.94	47.52
EER96848	Sorghum	nucleus	48.98	45.98
Zm00001d031781_P001	Maize	nucleus	46.53	45.42
GSMUA_Achr9P29130_001	Banana	nucleus	28.16	45.1
Zm00001d005841_P001	Maize	nucleus	44.08	44.63
CDY18636	Canola	nucleus	37.14	44.39
Bra037128.1-P	Field mustard	cytoskeleton, cytosol, nucleus	37.14	44.39
GSMUA_Achr10P...	Banana	nucleus	43.67	44.21
GSMUA_Achr7P23410_001	Banana	endoplasmic reticulum, extracellular, vacuole	30.2	44.05
Bra036071.1-P	Field mustard	nucleus	37.96	43.66
CDY30593	Canola	nucleus	37.96	43.66
CDX81342	Canola	cytoskeleton, cytosol, nucleus	36.73	43.48
EES15124	Sorghum	nucleus	47.35	43.12
CDY12799	Canola	nucleus	36.73	41.28
CDY17765	Canola	nucleus	37.96	41.15
CDX68583	Canola	nucleus	37.96	40.97
CDX83121	Canola	nucleus	38.37	40.87
Bra030002.1-P	Field mustard	nucleus	38.37	40.87
AT3G50330.1	Thale cress	nucleus	38.37	40.69
CDY01443	Canola	nucleus	36.33	40.64
Bra012128.1-P	Field mustard	nucleus	36.33	40.64
Bra036801.1-P	Field mustard	nucleus	37.55	39.83
CDY43559	Canola	nucleus	37.55	39.83
CDY63952	Canola	nucleus	37.55	39.83
AT5G67060.1	Thale cress	nucleus	38.78	39.42
GSMUA_Achr1P14400_001	Banana	nucleus	26.53	38.92
GSMUA_Achr11P...	Banana	nucleus	30.2	38.74
Solyc02g090950.1.1	Tomato	nucleus	35.1	38.74
PGSC0003DMT400010344	Potato	nucleus	34.69	37.95
GSMUA_Achr5P01290_001	Banana	nucleus	30.61	37.88
KRH28464	Soybean	nucleus	37.14	37.6
KRH77007	Soybean	nucleus	38.37	37.45
KRH57944	Soybean	nucleus	36.73	35.43
KRH04603	Soybean	nucleus	39.18	34.04
GSMUA_Achr3P01250_001	Banana	cytosol, nucleus, plastid	15.92	32.23
GSMUA_Achr4P23240_001	Banana	nucleus	15.92	26.71
GSMUA_Achr6P16890_001	Banana	nucleus	14.69	26.47
GSMUA_AchrUn_...	Banana	nucleus	28.16	25.27
GSMUA_Achr4P18820_001	Banana	nucleus	20.0	23.9
GSMUA_Achr3P25950_001	Banana	nucleus	32.24	22.44
GSMUA_Achr8P24970_001	Banana	nucleus	27.35	19.25
GSMUA_Achr6P07760_001	Banana	nucleus	17.14	14.63
GSMUA_AchrUn_...	Banana	nucleus	17.14	14.05
GSMUA_Achr2P17130_001	Banana	nucleus	17.96	13.92
GSMUA_Achr9P09600_001	Banana	nucleus	15.51	13.77
GSMUA_Achr10P...	Banana	nucleus	16.73	13.76
GSMUA_Achr2P22860_001	Banana	nucleus	17.55	13.35
GSMUA_Achr3P18870_001	Banana	nucleus	17.55	12.43
GSMUA_Achr6P09370_001	Banana	nucleus	16.73	12.09

Protein Annotations

EnsemblPlants:GSMUA_Achr9P15380_001	EnsemblPlants:GSMUA_Achr9T15380_001	EnsemblPlantsGene:GSMUA_Achr9G15380_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF74	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002948B6C	UniProt:M0U0J6	MapMan:15.5.32	:	:

Description

Transcription factor HEC2 [Source:GMGC_GENE;Acc:GSMUA_Achr9G15380_001]

Coordinates

chr9:+:10078691..10079428

Molecular Weight (calculated)

26284.5 Da

IEP (calculated)

6.005

GRAVY (calculated)

-0.191

Length

245 amino acids

Sequence
(BLAST)

001: MDVDFLNASP ELQVDLMNMM LQLQQLAELS EALPPNEQLS AASPQAFHSS PTAPASPVFA GPQTSSSSSL DATAAYDPIM GPLLNGSLAG DPSLASGPSS
101: LAHGPASTAA MREMIFRIAA MQPVHVDPDS VKPPKRRNVR ISKDPQSVAA RLRRERISER MRVLQHMVPG GTKMDTASML DEAIHYVKFL KTQVRSLEQA
201: AVSQGMGAAA ALPPTAGLIP SPGGYSYFQD MYQLQDQTFM NFAQM

Best Arabidopsis Sequence Match ( AT3G50330.1 )
(BLAST)

001: MDNSDILMNM MMQQMEKLPE HFSNSNPNPN PHNIMMLSES NTHPFFFNPT HSHLPFDQTM PHHQPGLNFR YAPSPSSSLP EKRGGCSDNA NMAAMREMIF
101: RIAVMQPIHI DPESVKPPKR KNVRISKDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKKQVQS LEEHAVVNGG GMTAVAGGAL
201: AGTVGGGYGG KGCGIMRSDH HQMLGNAQIL R

Arabidopsis Description

HEC2Transcription factor HEC2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SND4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.