Factsheet for GSMUA_Achr3P18870_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P16890_001	Banana	nucleus	30.92	78.68
GSMUA_Achr4P23240_001	Banana	nucleus	23.7	56.16
GSMUA_AchrUn_...	Banana	nucleus	41.62	48.16
GSMUA_Achr6P07760_001	Banana	nucleus	37.86	45.64
GSMUA_Achr2P17130_001	Banana	nucleus	41.33	45.25
GSMUA_Achr3P01250_001	Banana	cytosol, nucleus, plastid	13.87	39.67
GSMUA_Achr9P09600_001	Banana	nucleus	30.64	38.41
GSMUA_Achr6P18580_001	Banana	cytosol	11.85	33.61
GSMUA_Achr7P23410_001	Banana	endoplasmic reticulum, extracellular, vacuole	13.58	27.98
GSMUA_Achr8P23350_001	Banana	nucleus	12.43	27.74
GSMUA_Achr5P01290_001	Banana	nucleus	14.45	25.25
GSMUA_Achr1P14400_001	Banana	nucleus	12.14	25.15
GSMUA_Achr11P...	Banana	nucleus	13.87	25.13
GSMUA_Achr9P29130_001	Banana	nucleus	10.69	24.18
GSMUA_Achr10P...	Banana	nucleus	19.65	22.82
GSMUA_Achr2P22860_001	Banana	nucleus	19.08	20.5
GSMUA_Achr10P...	Banana	nucleus	13.87	19.83
GSMUA_Achr4P18820_001	Banana	nucleus	11.27	19.02
GSMUA_Achr6P09370_001	Banana	nucleus	18.5	18.88
GSMUA_Achr9P15380_001	Banana	nucleus	12.43	17.55
GSMUA_AchrUn_...	Banana	nucleus	13.01	16.48
GSMUA_Achr3P25950_001	Banana	nucleus	15.9	15.62
GSMUA_Achr8P24970_001	Banana	nucleus	14.74	14.66

Protein Annotations

EnsemblPlants:GSMUA_Achr3P18870_001	EnsemblPlants:GSMUA_Achr3T18870_001	EnsemblPlantsGene:GSMUA_Achr3G18870_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR16223	PANTHER:PTHR16223:SF105	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002958C03	UniProt:M0SFV3	MapMan:15.5.32	:	:

Description

Putative helix-loop-helix DNA-binding domain containing protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G18870_001]

Coordinates

chr3:+:20240553..20241947

Molecular Weight (calculated)

37490.5 Da

IEP (calculated)

4.968

GRAVY (calculated)

-0.635

Length

346 amino acids

Sequence
(BLAST)

001: MEPQGLVSEA SWSCFDPAMS VEESEVMAQL LGGSQSFAGD HDQQQQMLWS DHNADSYYCA ATSYPDPYCW PQGNCSRSSS TDYYYFSDPH MVPAIGVSST
101: PMSFSIGGER IDTPSFPVGA HHQFGAAVCV TEEASGDEVV DSLAKPPPPP PAHASQAIKR RLHGGVIEVA ANTEEDDTQL QSPKKKARAS APMPKKGKNA
201: QSKKAQKSGG SCNEEESNGD MNPQSSCCYT SEDDSNGSQE LKGAAASLNS NGKTRAGRGS ATDPQSLYAR KRRERINERL RILQTLVPNG TKVDISTMLE
301: EAVQYVKFLQ LQIKLLSSDD LWMYAPIAYN GMNLGIDLNI ASKSQQ

Best Arabidopsis Sequence Match ( AT2G14760.1 )
(BLAST)

001: MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSSSET TATLTAYHHQ GSQWNGGFCF SQESSSYSGY CAAMPRQEED NNGMEDATIN TNLYLVGEET
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR

Arabidopsis Description

Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IGG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.