Factsheet for GSMUA_Achr6P09370_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P26350_001
GSMUA_Achr4P30070_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G66470.1	GSMUA_Achr4P26350_001	AT5G47100.1	21798944
AT1G66470.1	GSMUA_Achr4P30070_001	AT5G47100.1	21798944
AT1G66470.1	GSMUA_AchrUn_...	AT5G47100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P01250_001	Banana	cytosol, nucleus, plastid	28.91	80.99
GSMUA_Achr10P...	Banana	nucleus	62.24	70.81
GSMUA_Achr2P22860_001	Banana	nucleus	59.59	62.73
TraesCS3B01G007700.1	Wheat	nucleus	34.22	42.34
TraesCS3B01G010400.1	Wheat	nucleus	34.22	42.34
TraesCS3A01G006300.1	Wheat	cytosol, nucleus, plastid	33.92	41.97
TraesCS3D01G004300.1	Wheat	cytosol, nucleus, plastid	33.63	41.45
Zm00001d017804_P001	Maize	nucleus	35.69	41.02
TraesCS6B01G303600.1	Wheat	cytosol, nucleus, plastid	33.63	40.14
Os02t0710300-01	Rice	nucleus	35.4	40.0
TraesCS6D01G256600.1	Wheat	nucleus	33.92	39.79
CDX96145	Canola	nucleus	33.63	39.31
CDY11694	Canola	nucleus	33.63	39.31
CDY55674	Canola	nucleus	33.63	39.31
CDX68049	Canola	nucleus	33.63	39.31
EES07381	Sorghum	nucleus	35.4	39.22
TraesCS6D01G256500.1	Wheat	cytosol	32.45	38.87
TraesCS6A01G276100.1	Wheat	nucleus	33.33	38.83
TraesCS6B01G303500.1	Wheat	nucleus	32.74	38.81
TraesCS6A01G276200.1	Wheat	cytosol, nucleus, plastid	32.74	38.41
VIT_14s0006g01470.t01	Wine grape	nucleus	39.23	38.33
TraesCS6D01G256300.1	Wheat	nucleus	33.04	38.1
EES00435	Sorghum	nucleus	32.45	37.93
KRH15121	Soybean	nucleus	32.15	37.2
KRH73015	Soybean	nucleus	32.15	36.95
TraesCS6D01G256400.1	Wheat	nucleus	29.79	36.73
Os01t0111500-01	Rice	nucleus	31.86	36.61
KRH30960	Soybean	nucleus	36.58	36.58
KRG97923	Soybean	nucleus	36.28	36.28
AT1G66470.1	Thale cress	nucleus	31.86	36.24
GSMUA_Achr4P23240_001	Banana	nucleus	15.34	35.62
CDY61813	Canola	nucleus	31.56	35.08
PGSC0003DMT400078776	Potato	nucleus	32.74	35.02
CDY58387	Canola	nucleus	31.56	34.85
AT5G37800.1	Thale cress	nucleus	31.27	34.53
Bra019708.1-P	Field mustard	nucleus	31.27	34.53
Solyc02g091440.1.1	Tomato	nucleus	32.15	34.38
Bra004169.1-P	Field mustard	nucleus	26.84	33.96
TraesCS7A01G229900.1	Wheat	nucleus	28.32	33.68
GSMUA_Achr6P16890_001	Banana	nucleus	13.27	33.09
Zm00001d008444_P001	Maize	nucleus	31.56	32.92
TraesCS7B01G195800.1	Wheat	nucleus	28.32	32.88
TraesCS7D01G230600.1	Wheat	nucleus	27.73	32.87
GSMUA_Achr6P18580_001	Banana	cytosol	11.5	31.97
HORVU7Hr1G046580.1	Barley	plasma membrane, vacuole	28.61	29.31
Os06t0496400-01	Rice	nucleus	23.89	27.55
GSMUA_Achr7P23410_001	Banana	endoplasmic reticulum, extracellular, vacuole	12.68	25.6
GSMUA_Achr8P23350_001	Banana	nucleus	11.21	24.52
GSMUA_Achr9P29130_001	Banana	nucleus	10.91	24.18
GSMUA_Achr1P14400_001	Banana	nucleus	11.8	23.95
GSMUA_Achr9P09600_001	Banana	nucleus	17.99	22.1
GSMUA_Achr6P07760_001	Banana	nucleus	18.58	21.95
GSMUA_AchrUn_...	Banana	nucleus	19.17	21.74
GSMUA_Achr2P17130_001	Banana	nucleus	19.47	20.89
GSMUA_Achr5P01290_001	Banana	nucleus	12.09	20.71
GSMUA_Achr11P...	Banana	nucleus	11.5	20.42
GSMUA_Achr4P18820_001	Banana	nucleus	12.09	20.0
GSMUA_Achr10P...	Banana	nucleus	13.57	19.01
GSMUA_Achr3P18870_001	Banana	nucleus	18.88	18.5
GSMUA_Achr9P15380_001	Banana	nucleus	12.09	16.73
GSMUA_AchrUn_...	Banana	nucleus	12.68	15.75
GSMUA_Achr3P25950_001	Banana	nucleus	14.45	13.92
GSMUA_Achr8P24970_001	Banana	nucleus	12.68	12.36

Protein Annotations

EnsemblPlants:GSMUA_Achr6P09370_001	EnsemblPlants:GSMUA_Achr6T09370_001	EnsemblPlantsGene:GSMUA_Achr6G09370_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR16223	PANTHER:PTHR16223:SF19	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002951438	UniProt:M0T5I6	MapMan:15.5.32	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G09370_001]

Coordinates

chr6:-:6285605..6287165

Molecular Weight (calculated)

36984.4 Da

IEP (calculated)

5.130

GRAVY (calculated)

-0.476

Length

339 amino acids

Sequence
(BLAST)

001: MALEKDRIWE GSQACPLYGG EASIQRLNPP SLGCMMIGEG EGSDFHGSSW SSLLPFLSDP KNSFSSTYTL EAVDALPQEA LSILDCNATT SEHWAYSNAS
101: VLCFEKGGRM PRAGPPSLDH DDDCAAWIDA MDQNCQLSDL DIKCPTADST LIHEQDCFAV ENWCAVVGTP EKDKRQCQDR FGLIYPGAAA VDGLRESIGR
201: ATVLQKRPYT DASDRPSPKK QCRGNTGTTK DKSSPSKDPQ STAAKNRRER ISERLKILQD LVPNGTKVDL VTMLEKAISY VKFLQLQVKV LATDEFWPAQ
301: GVKAPDVGKV KEALDAILSS HRDGSSSSKN AIRTFESAC

Best Arabidopsis Sequence Match ( AT1G66470.1 )
(BLAST)

001: MALVNDHPNE TNYLSKQNSS SSEDLSSPGL DQPDAAYAGG GGGGGSASSS STMNSDHQQH QGFVFYPSGE DHHNSLMDFN GSSFLNFDHH ESFPPPAISC
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN

Arabidopsis Description

BHLH83RHD6 [Source:UniProtKB/TrEMBL;Acc:A0A178W430]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.