Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P26350_001 | |
| GSMUA_Achr4P30070_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G66470.1 | GSMUA_Achr4P26350_001 | AT5G47100.1 | 21798944 |
| AT1G66470.1 | GSMUA_Achr4P30070_001 | AT5G47100.1 | 21798944 |
| AT1G66470.1 | GSMUA_AchrUn_... | AT5G47100.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P01250_001 | Banana | cytosol, nucleus, plastid | 30.43 | 80.99 |
| GSMUA_Achr10P... | Banana | nucleus | 59.01 | 63.76 |
| GSMUA_Achr6P09370_001 | Banana | nucleus | 62.73 | 59.59 |
| TraesCS3B01G007700.1 | Wheat | nucleus | 37.27 | 43.8 |
| TraesCS3B01G010400.1 | Wheat | nucleus | 37.27 | 43.8 |
| TraesCS3A01G006300.1 | Wheat | cytosol, nucleus, plastid | 36.96 | 43.43 |
| TraesCS3D01G004300.1 | Wheat | cytosol, nucleus, plastid | 36.65 | 42.91 |
| TraesCS6B01G303600.1 | Wheat | cytosol, nucleus, plastid | 36.65 | 41.55 |
| Zm00001d017804_P001 | Maize | nucleus | 37.58 | 41.02 |
| Os02t0710300-01 | Rice | nucleus | 38.2 | 41.0 |
| EES07381 | Sorghum | nucleus | 38.82 | 40.85 |
| TraesCS6D01G256600.1 | Wheat | nucleus | 36.34 | 40.48 |
| KRH15121 | Soybean | nucleus | 36.65 | 40.27 |
| TraesCS6A01G276200.1 | Wheat | cytosol, nucleus, plastid | 36.02 | 40.14 |
| TraesCS6D01G256500.1 | Wheat | cytosol | 35.09 | 39.93 |
| TraesCS6A01G276100.1 | Wheat | nucleus | 36.02 | 39.86 |
| TraesCS6B01G303500.1 | Wheat | nucleus | 35.4 | 39.86 |
| KRH73015 | Soybean | nucleus | 36.34 | 39.66 |
| CDY11694 | Canola | nucleus | 35.4 | 39.31 |
| CDX96145 | Canola | nucleus | 35.4 | 39.31 |
| CDX68049 | Canola | nucleus | 35.4 | 39.31 |
| VIT_14s0006g01470.t01 | Wine grape | nucleus | 42.24 | 39.19 |
| TraesCS6D01G256300.1 | Wheat | nucleus | 35.71 | 39.12 |
| EES00435 | Sorghum | nucleus | 35.09 | 38.97 |
| CDY55674 | Canola | nucleus | 35.09 | 38.97 |
| Os01t0111500-01 | Rice | nucleus | 34.47 | 37.63 |
| AT1G66470.1 | Thale cress | nucleus | 34.47 | 37.25 |
| TraesCS6D01G256400.1 | Wheat | nucleus | 31.68 | 37.09 |
| KRG97923 | Soybean | nucleus | 38.82 | 36.87 |
| Zm00001d008444_P001 | Maize | nucleus | 36.65 | 36.31 |
| KRH30960 | Soybean | nucleus | 37.89 | 35.99 |
| AT5G37800.1 | Thale cress | nucleus | 33.85 | 35.5 |
| CDY61813 | Canola | nucleus | 33.54 | 35.41 |
| Solyc02g091440.1.1 | Tomato | nucleus | 34.78 | 35.33 |
| PGSC0003DMT400078776 | Potato | nucleus | 34.78 | 35.33 |
| GSMUA_Achr4P23240_001 | Banana | nucleus | 15.84 | 34.93 |
| Bra019708.1-P | Field mustard | nucleus | 33.23 | 34.85 |
| CDY58387 | Canola | nucleus | 33.23 | 34.85 |
| TraesCS7A01G229900.1 | Wheat | nucleus | 30.12 | 34.04 |
| Bra004169.1-P | Field mustard | nucleus | 28.26 | 33.96 |
| TraesCS7D01G230600.1 | Wheat | nucleus | 30.12 | 33.92 |
| TraesCS7B01G195800.1 | Wheat | nucleus | 30.75 | 33.9 |
| GSMUA_Achr6P16890_001 | Banana | nucleus | 14.29 | 33.82 |
| GSMUA_Achr6P18580_001 | Banana | cytosol | 12.11 | 31.97 |
| HORVU7Hr1G046580.1 | Barley | plasma membrane, vacuole | 31.99 | 31.12 |
| Os06t0496400-01 | Rice | nucleus | 25.47 | 27.89 |
| GSMUA_Achr8P23350_001 | Banana | nucleus | 12.42 | 25.81 |
| GSMUA_Achr7P23410_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 13.35 | 25.6 |
| GSMUA_Achr9P09600_001 | Banana | nucleus | 20.81 | 24.28 |
| GSMUA_Achr9P29130_001 | Banana | nucleus | 11.18 | 23.53 |
| GSMUA_Achr1P14400_001 | Banana | nucleus | 12.11 | 23.35 |
| GSMUA_AchrUn_... | Banana | nucleus | 20.19 | 21.74 |
| GSMUA_Achr2P17130_001 | Banana | nucleus | 21.12 | 21.52 |
| GSMUA_Achr6P07760_001 | Banana | nucleus | 18.94 | 21.25 |
| GSMUA_Achr5P01290_001 | Banana | nucleus | 13.04 | 21.21 |
| GSMUA_Achr11P... | Banana | nucleus | 12.42 | 20.94 |
| GSMUA_Achr4P18820_001 | Banana | nucleus | 12.73 | 20.0 |
| GSMUA_Achr10P... | Banana | nucleus | 14.6 | 19.42 |
| GSMUA_Achr3P18870_001 | Banana | nucleus | 20.5 | 19.08 |
| GSMUA_Achr9P15380_001 | Banana | nucleus | 13.35 | 17.55 |
| GSMUA_AchrUn_... | Banana | nucleus | 13.04 | 15.38 |
| GSMUA_Achr3P25950_001 | Banana | nucleus | 15.84 | 14.49 |
| GSMUA_Achr8P24970_001 | Banana | nucleus | 13.66 | 12.64 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P22860_001 | EnsemblPlants:GSMUA_Achr2T22860_001 | EnsemblPlantsGene:GSMUA_Achr2G22860_001 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR16223 | PANTHER:PTHR16223:SF19 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0002967AB3 | UniProt:M0SAC7 | MapMan:15.5.32 | : | : |
Description
Putative Whole genome shotgun sequence of line PN40024, scaffold_6.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr2G22860_001]
Coordinates
chr2:-:21774473..21775897
Molecular Weight (calculated)
35290.3 Da
IEP (calculated)
6.775
GRAVY (calculated)
-0.625
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MALAKDRTRQ GPPACPLDGG GPSIQELRLP SSLELFGYLG DGSTLLRDGE RSSDSHGSYS SSLLSFHSDP RNSDSCAYNM LGAVISPPQE SLSVVASQQS
101: WGCFDTSVLS FDGHLNLDHE EECAAWIDAM DRSYQPNHLD IKRGTADSRL IQEKDCFEVG SGNKRRGQDR FGFIYSGAAA FDDLQESIGQ TTVLQKRSST
201: NSCDVQSPKK QCGTPRRTKD KKSTSPSKDP QQSIAAKNRR ERISERLKIL QDLVPNGTKV DLVTMLEKAI SYVKFLQLQV KVLATDELWP GQGGKPPDVG
301: QVKEAIDAIL SSHGDRNSQL RL
101: WGCFDTSVLS FDGHLNLDHE EECAAWIDAM DRSYQPNHLD IKRGTADSRL IQEKDCFEVG SGNKRRGQDR FGFIYSGAAA FDDLQESIGQ TTVLQKRSST
201: NSCDVQSPKK QCGTPRRTKD KKSTSPSKDP QQSIAAKNRR ERISERLKIL QDLVPNGTKV DLVTMLEKAI SYVKFLQLQV KVLATDELWP GQGGKPPDVG
301: QVKEAIDAIL SSHGDRNSQL RL
001: MALVNDHPNE TNYLSKQNSS SSEDLSSPGL DQPDAAYAGG GGGGGSASSS STMNSDHQQH QGFVFYPSGE DHHNSLMDFN GSSFLNFDHH ESFPPPAISC
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN
Arabidopsis Description
BHLH83RHD6 [Source:UniProtKB/TrEMBL;Acc:A0A178W430]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.