Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d000046_P001 | |
| Zm00001d029976_P004 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G66470.1 | Zm00001d000046_P001 | AT5G47100.1 | 21798944 |
| AT1G66470.1 | Zm00001d029976_P004 | AT5G47100.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES07381 | Sorghum | nucleus | 87.8 | 84.64 |
| GSMUA_Achr3P01250_001 | Banana | cytosol, nucleus, plastid | 26.78 | 65.29 |
| Os02t0710300-01 | Rice | nucleus | 64.41 | 63.33 |
| TraesCS6D01G256500.1 | Wheat | cytosol | 60.34 | 62.9 |
| TraesCS6B01G303600.1 | Wheat | cytosol, nucleus, plastid | 60.0 | 62.32 |
| TraesCS6A01G276200.1 | Wheat | cytosol, nucleus, plastid | 61.02 | 62.28 |
| TraesCS6D01G256600.1 | Wheat | nucleus | 60.68 | 61.94 |
| TraesCS6A01G276100.1 | Wheat | nucleus | 60.68 | 61.51 |
| TraesCS6B01G303500.1 | Wheat | nucleus | 58.98 | 60.84 |
| TraesCS6D01G256300.1 | Wheat | nucleus | 60.34 | 60.54 |
| TraesCS6D01G256400.1 | Wheat | nucleus | 52.88 | 56.73 |
| GSMUA_Achr10P... | Banana | nucleus | 40.68 | 40.27 |
| GSMUA_Achr2P22860_001 | Banana | nucleus | 41.02 | 37.58 |
| CDY11694 | Canola | nucleus | 35.93 | 36.55 |
| CDX96145 | Canola | nucleus | 35.93 | 36.55 |
| CDX68049 | Canola | nucleus | 35.93 | 36.55 |
| CDY55674 | Canola | nucleus | 35.59 | 36.21 |
| GSMUA_Achr6P09370_001 | Banana | nucleus | 41.02 | 35.69 |
| AT1G66470.1 | Thale cress | nucleus | 34.92 | 34.56 |
| KRH15121 | Soybean | nucleus | 34.24 | 34.47 |
| CDY61813 | Canola | nucleus | 35.59 | 34.43 |
| KRH73015 | Soybean | nucleus | 34.24 | 34.24 |
| CDY58387 | Canola | nucleus | 35.59 | 34.2 |
| Zm00001d008444_P001 | Maize | nucleus | 37.63 | 34.15 |
| AT5G37800.1 | Thale cress | nucleus | 35.25 | 33.88 |
| Bra019708.1-P | Field mustard | nucleus | 35.25 | 33.88 |
| KRH30960 | Soybean | nucleus | 36.27 | 31.56 |
| VIT_14s0006g01470.t01 | Wine grape | nucleus | 36.95 | 31.41 |
| Bra004169.1-P | Field mustard | nucleus | 28.47 | 31.34 |
| KRG97923 | Soybean | nucleus | 35.59 | 30.97 |
| Solyc02g091440.1.1 | Tomato | nucleus | 33.22 | 30.91 |
| PGSC0003DMT400078776 | Potato | nucleus | 32.88 | 30.6 |
| Zm00001d048786_P001 | Maize | nucleus, plastid | 16.61 | 21.03 |
| Zm00001d021988_P001 | Maize | nucleus | 20.0 | 20.0 |
| Zm00001d006733_P001 | Maize | nucleus | 19.32 | 19.93 |
| Zm00001d005841_P001 | Maize | nucleus | 15.59 | 19.01 |
| Zm00001d020705_P001 | Maize | nucleus | 15.25 | 18.59 |
| Zm00001d050016_P001 | Maize | nucleus | 14.92 | 18.26 |
| Zm00001d042988_P001 | Maize | nucleus, plastid | 12.88 | 18.01 |
| Zm00001d042989_P001 | Maize | nucleus, plastid | 12.88 | 18.01 |
| Zm00001d031781_P001 | Maize | nucleus | 15.25 | 17.93 |
| Zm00001d041351_P001 | Maize | nucleus | 17.97 | 17.43 |
| Zm00001d028085_P001 | Maize | nucleus | 14.92 | 14.86 |
| Zm00001d049721_P001 | Maize | nucleus | 14.24 | 14.63 |
| Zm00001d048141_P001 | Maize | cytosol | 14.58 | 13.61 |
| Zm00001d035027_P001 | Maize | nucleus | 14.58 | 12.84 |
| Zm00001d011187_P001 | Maize | nucleus | 16.61 | 11.4 |
| Zm00001d043699_P001 | Maize | nucleus | 15.25 | 10.66 |
| Zm00001d044242_P001 | Maize | nucleus | 16.27 | 9.98 |
| Zm00001d038863_P001 | Maize | nucleus | 12.88 | 9.6 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | UniProt:A0A1D6HHV4 | ProteinID:AQK74101.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR16223 | PANTHER:PTHR16223:SF19 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI000222174B | EnsemblPlantsGene:Zm00001d017804 | EnsemblPlants:Zm00001d017804_P001 | EnsemblPlants:Zm00001d017804_T001 | InterPro:bHLH_dom | SEG:seg |
Description
bHLH-transcription factor 89Transcription factor bHLH83
Coordinates
chr5:+:207299284..207300818
Molecular Weight (calculated)
30619.5 Da
IEP (calculated)
5.209
GRAVY (calculated)
-0.308
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MALVREHGGY YGGFDSVEAA AFDTLGYGHG ASLGFDASSA LFGEGGYAAG GGDAWAGAGA STVLAFNRTT AAAAVGVEEE EEECDAWIDA MDEDDQSSGP
101: AAAAPEARHA LTASVGFDAS TGCFTLTERA SSSSGGAGRP FGLLFPSTSS SGGTPERTAP VRVPQKRTYL SAEPQAVSPN KKHCGAGRKA SKAKLASTAP
201: TKDPQSLAAK NRRERISERL RALQELVPNG TKVDLVTMLE KAISYVKFLQ LQVKVLATDE FWPAQGGKAP EISQVREALD AILSSASQSQ RGQLN
101: AAAAPEARHA LTASVGFDAS TGCFTLTERA SSSSGGAGRP FGLLFPSTSS SGGTPERTAP VRVPQKRTYL SAEPQAVSPN KKHCGAGRKA SKAKLASTAP
201: TKDPQSLAAK NRRERISERL RALQELVPNG TKVDLVTMLE KAISYVKFLQ LQVKVLATDE FWPAQGGKAP EISQVREALD AILSSASQSQ RGQLN
001: MALVNDHPNE TNYLSKQNSS SSEDLSSPGL DQPDAAYAGG GGGGGSASSS STMNSDHQQH QGFVFYPSGE DHHNSLMDFN GSSFLNFDHH ESFPPPAISC
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN
Arabidopsis Description
BHLH83RHD6 [Source:UniProtKB/TrEMBL;Acc:A0A178W430]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.