Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G303600.1 | Wheat | cytosol, nucleus, plastid | 88.58 | 90.14 |
| TraesCS6D01G256500.1 | Wheat | cytosol | 83.74 | 85.51 |
| TraesCS6D01G256300.1 | Wheat | nucleus | 86.16 | 84.69 |
| TraesCS6D01G256400.1 | Wheat | nucleus | 80.28 | 84.36 |
| GSMUA_Achr3P01250_001 | Banana | cytosol, nucleus, plastid | 26.3 | 62.81 |
| EES07381 | Sorghum | nucleus | 66.09 | 62.42 |
| Zm00001d017804_P001 | Maize | nucleus | 61.94 | 60.68 |
| Os02t0710300-01 | Rice | nucleus | 60.9 | 58.67 |
| TraesCS3D01G004300.1 | Wheat | cytosol, nucleus, plastid | 38.41 | 40.36 |
| TraesCS7D01G230600.1 | Wheat | nucleus | 37.37 | 37.76 |
| GSMUA_Achr10P... | Banana | nucleus | 38.75 | 37.58 |
| GSMUA_Achr2P22860_001 | Banana | nucleus | 40.48 | 36.34 |
| CDY55674 | Canola | nucleus | 34.26 | 34.14 |
| GSMUA_Achr6P09370_001 | Banana | nucleus | 39.79 | 33.92 |
| CDY11694 | Canola | nucleus | 33.91 | 33.79 |
| CDX96145 | Canola | nucleus | 33.91 | 33.79 |
| CDX68049 | Canola | nucleus | 33.91 | 33.79 |
| AT1G66470.1 | Thale cress | nucleus | 33.91 | 32.89 |
| CDY61813 | Canola | nucleus | 34.26 | 32.46 |
| CDY58387 | Canola | nucleus | 34.26 | 32.25 |
| KRH73015 | Soybean | nucleus | 32.87 | 32.2 |
| KRH15121 | Soybean | nucleus | 32.53 | 32.08 |
| Bra019708.1-P | Field mustard | nucleus | 33.91 | 31.92 |
| VIT_14s0006g01470.t01 | Wine grape | nucleus | 37.72 | 31.41 |
| AT5G37800.1 | Thale cress | nucleus | 32.87 | 30.94 |
| Solyc02g091440.1.1 | Tomato | nucleus | 32.87 | 29.97 |
| PGSC0003DMT400078776 | Potato | nucleus | 32.53 | 29.65 |
| Bra004169.1-P | Field mustard | nucleus | 26.99 | 29.1 |
| KRH30960 | Soybean | nucleus | 33.91 | 28.91 |
| KRG97923 | Soybean | nucleus | 33.56 | 28.61 |
| TraesCS1D01G347900.1 | Wheat | nucleus | 17.65 | 27.42 |
| TraesCS5D01G078800.1 | Wheat | nucleus | 22.84 | 22.84 |
| TraesCS5D01G411600.1 | Wheat | nucleus | 22.49 | 21.67 |
| TraesCS3D01G433200.1 | Wheat | nucleus | 19.03 | 21.57 |
| TraesCS4D01G079500.1 | Wheat | nucleus | 23.18 | 21.41 |
| TraesCS2D01G193700.1 | Wheat | nucleus | 22.15 | 21.19 |
| TraesCS7D01G263400.1 | Wheat | nucleus | 14.88 | 19.55 |
| TraesCS7D01G170900.1 | Wheat | nucleus | 11.76 | 18.38 |
| TraesCS3D01G344600.1 | Wheat | nucleus | 13.49 | 18.31 |
| TraesCS4D01G257100.1 | Wheat | nucleus | 20.42 | 17.82 |
| TraesCS5D01G244000.1 | Wheat | nucleus | 14.19 | 17.45 |
| TraesCS3D01G252700.1 | Wheat | nucleus | 16.26 | 12.18 |
| TraesCS7D01G319600.1 | Wheat | nucleus | 13.15 | 11.99 |
| TraesCS1D01G367700.1 | Wheat | nucleus | 16.26 | 11.72 |
| TraesCS3D01G208500.2 | Wheat | mitochondrion | 15.57 | 9.49 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G256600.1 | EnsemblPlantsGene:TraesCS6D01G256600 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF19 | PFAM:PF00010 | PFscan:PS50888 | SMART:SM00353 | SUPFAM:SSF47459 | TIGR:cd00083 |
| MapMan:15.5.32 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:362953698..362954923
Molecular Weight (calculated)
30285.3 Da
IEP (calculated)
5.169
GRAVY (calculated)
-0.371
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MALVREPMVM YDGGFDAEAS AFDALDYGGH DALLGSVDTA ALYGSYAYAH GEPAGAASAY VPDSASWAGA GPSVLSFGRA ARGHAAQVVA QEEADCDAWM
101: DAMDEDQHAG PASTIGFDPT TGCFSLMQNS GGAGRPFGLL FPSTSNGSPD AAAPARGSSK RSYAARVQDA EPRAAKKPCG GSRKTSKAKP AAPTHNSPKG
201: DPQSLAAKNR REKISERLRT LQELVPNGTK VDMVTMLEKA VSYVKFLQLQ VKVLATDEFW PAQGGTAPEI SQVKEALDAI LSSQREQLD
101: DAMDEDQHAG PASTIGFDPT TGCFSLMQNS GGAGRPFGLL FPSTSNGSPD AAAPARGSSK RSYAARVQDA EPRAAKKPCG GSRKTSKAKP AAPTHNSPKG
201: DPQSLAAKNR REKISERLRT LQELVPNGTK VDMVTMLEKA VSYVKFLQLQ VKVLATDEFW PAQGGTAPEI SQVKEALDAI LSSQREQLD
001: MSLINEHCNE RNYISTPNSS EDLSSPQNCG LDEGASASSS STINSDHQNN QGFVFYPSGE TIEDHNSLMD FNASSFFTFD NHRSLISPVT NGGAFPVVDG
101: NMSYSYDGWS HHQVDSISPR VIKTPNSFET TSSFGLTSNS MSKPATNHGN GDWLYSGSTI VNIGSRHEST SPKLAGNKRP FTGENTQLSK KPSSGTNGKI
201: KPKATTSPKD PQSLAAKNRR ERISERLKVL QELVPNGTKV DLVTMLEKAI GYVKFLQVQV KVLAADEFWP AQGGKAPDIS QVKEAIDAIL SSSQRDSNST
301: RETSIAE
101: NMSYSYDGWS HHQVDSISPR VIKTPNSFET TSSFGLTSNS MSKPATNHGN GDWLYSGSTI VNIGSRHEST SPKLAGNKRP FTGENTQLSK KPSSGTNGKI
201: KPKATTSPKD PQSLAAKNRR ERISERLKVL QELVPNGTKV DLVTMLEKAI GYVKFLQVQV KVLAADEFWP AQGGKAPDIS QVKEAIDAIL SSSQRDSNST
301: RETSIAE
Arabidopsis Description
BHLH86RSL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.