Factsheet for TraesCS5D01G078800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G074500.1	Wheat	nucleus	93.77	93.45
TraesCS5A01G067600.1	Wheat	nucleus	93.77	93.45
HORVU5Hr1G018100.1	Barley	cytosol, mitochondrion, nucleus	87.54	81.09
Os12t0589000-00	Rice	nucleus	69.2	65.79
EES17296	Sorghum	nucleus	64.01	58.54
TraesCS4D01G079500.1	Wheat	nucleus	60.9	56.23
TraesCS1D01G347900.1	Wheat	nucleus	26.3	40.86
PGSC0003DMT400030165	Potato	nucleus	24.57	39.01
Zm00001d041351_P001	Maize	nucleus	38.06	36.18
TraesCS3D01G433200.1	Wheat	nucleus	31.14	35.29
TraesCS4D01G257100.1	Wheat	nucleus	37.72	32.93
TraesCS2D01G193700.1	Wheat	nucleus	34.26	32.78
TraesCS5D01G411600.1	Wheat	nucleus	33.91	32.67
Solyc04g077960.1.1	Tomato	nucleus	38.06	30.99
PGSC0003DMT400055446	Potato	nucleus	37.72	30.19
Solyc12g088380.1.1	Tomato	nucleus	28.37	29.6
TraesCS3D01G004300.1	Wheat	cytosol, nucleus, plastid	21.8	22.91
TraesCS6D01G256600.1	Wheat	nucleus	22.84	22.84
TraesCS6D01G256300.1	Wheat	nucleus	23.18	22.79
TraesCS6D01G256500.1	Wheat	cytosol	22.15	22.61
TraesCS6D01G256400.1	Wheat	nucleus	21.45	22.55
TraesCS7D01G170900.1	Wheat	nucleus	13.15	20.54
TraesCS7D01G263400.1	Wheat	nucleus	15.22	20.0
TraesCS7D01G230600.1	Wheat	nucleus	19.38	19.58
TraesCS5D01G244000.1	Wheat	nucleus	15.22	18.72
TraesCS3D01G344600.1	Wheat	nucleus	12.8	17.37
TraesCS7D01G319600.1	Wheat	nucleus	14.88	13.56
TraesCS3D01G252700.1	Wheat	nucleus	16.95	12.69
TraesCS1D01G367700.1	Wheat	nucleus	17.3	12.47
TraesCS3D01G208500.2	Wheat	mitochondrion	14.19	8.65

Protein Annotations

EnsemblPlants:TraesCS5D01G078800.1	EnsemblPlantsGene:TraesCS5D01G078800	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR16223
PANTHER:PTHR16223:SF61	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:78804257..78805516

Molecular Weight (calculated)

31491.7 Da

IEP (calculated)

4.552

GRAVY (calculated)

-0.577

Length

289 amino acids

Sequence
(BLAST)

001: MEAGGLISEA GWTMFDFPPQ GEESDIMAQL LGTFPSHGDE AQQDLPWYQA SHPSYYDADL NTSACSDSNA SSFAVPSECM GYYLGDSSEA LGITSLAPQD
101: LNLVQEQGAT EFLNMIPSIS HDLYRNGESS CEGLDSVSAT NKRKHSVEEE IDGQARGRKC ARKAAPKRAK NAKQTEASCC TSDNDSNASQ ESADAGVTPK
201: GKARAGRGAA TDPQSLYARK RRERINERLK TLQTLVPNGT KVDMSTMLEE AVQYVKFLQL QIKVLSSDEM WMYAPIAYNG MNIGLDLNM

Best Arabidopsis Sequence Match ( AT2G14760.1 )
(BLAST)

001: MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSSSET TATLTAYHHQ GSQWNGGFCF SQESSSYSGY CAAMPRQEED NNGMEDATIN TNLYLVGEET
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR

Arabidopsis Description

Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IGG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.