Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G276100.1 | Wheat | nucleus | 93.54 | 94.5 |
| TraesCS6B01G303500.1 | Wheat | nucleus | 89.46 | 91.96 |
| TraesCS6D01G256400.1 | Wheat | nucleus | 84.69 | 90.55 |
| TraesCS6D01G256600.1 | Wheat | nucleus | 84.69 | 86.16 |
| TraesCS6D01G256500.1 | Wheat | cytosol | 81.97 | 85.16 |
| EES07381 | Sorghum | nucleus | 64.29 | 61.76 |
| Zm00001d017804_P001 | Maize | nucleus | 60.54 | 60.34 |
| GSMUA_Achr3P01250_001 | Banana | cytosol, nucleus, plastid | 24.83 | 60.33 |
| Os02t0710300-01 | Rice | nucleus | 59.18 | 58.0 |
| TraesCS3D01G004300.1 | Wheat | cytosol, nucleus, plastid | 37.76 | 40.36 |
| TraesCS7D01G230600.1 | Wheat | nucleus | 37.07 | 38.11 |
| GSMUA_Achr10P... | Banana | nucleus | 37.41 | 36.91 |
| GSMUA_Achr2P22860_001 | Banana | nucleus | 39.12 | 35.71 |
| CDY11694 | Canola | nucleus | 32.65 | 33.1 |
| CDX96145 | Canola | nucleus | 32.65 | 33.1 |
| CDX68049 | Canola | nucleus | 32.65 | 33.1 |
| GSMUA_Achr6P09370_001 | Banana | nucleus | 38.1 | 33.04 |
| KRH15121 | Soybean | nucleus | 32.65 | 32.76 |
| CDY55674 | Canola | nucleus | 32.31 | 32.76 |
| AT1G66470.1 | Thale cress | nucleus | 32.99 | 32.55 |
| KRH73015 | Soybean | nucleus | 32.65 | 32.54 |
| VIT_14s0006g01470.t01 | Wine grape | nucleus | 38.1 | 32.28 |
| CDY61813 | Canola | nucleus | 33.33 | 32.13 |
| CDY58387 | Canola | nucleus | 33.33 | 31.92 |
| Bra019708.1-P | Field mustard | nucleus | 32.99 | 31.6 |
| AT5G37800.1 | Thale cress | nucleus | 32.31 | 30.94 |
| Solyc02g091440.1.1 | Tomato | nucleus | 30.95 | 28.71 |
| KRH30960 | Soybean | nucleus | 32.99 | 28.61 |
| PGSC0003DMT400078776 | Potato | nucleus | 30.61 | 28.39 |
| Bra004169.1-P | Field mustard | nucleus | 25.85 | 28.36 |
| KRG97923 | Soybean | nucleus | 32.65 | 28.32 |
| TraesCS1D01G347900.1 | Wheat | nucleus | 17.01 | 26.88 |
| TraesCS5D01G078800.1 | Wheat | nucleus | 22.79 | 23.18 |
| TraesCS2D01G193700.1 | Wheat | nucleus | 22.79 | 22.19 |
| TraesCS3D01G433200.1 | Wheat | nucleus | 19.05 | 21.96 |
| TraesCS5D01G411600.1 | Wheat | nucleus | 21.77 | 21.33 |
| TraesCS4D01G079500.1 | Wheat | nucleus | 22.45 | 21.09 |
| TraesCS7D01G263400.1 | Wheat | nucleus | 14.29 | 19.09 |
| TraesCS3D01G344600.1 | Wheat | nucleus | 12.93 | 17.84 |
| TraesCS4D01G257100.1 | Wheat | nucleus | 19.73 | 17.52 |
| TraesCS5D01G244000.1 | Wheat | nucleus | 13.61 | 17.02 |
| TraesCS7D01G170900.1 | Wheat | nucleus | 10.54 | 16.76 |
| TraesCS3D01G252700.1 | Wheat | nucleus | 15.65 | 11.92 |
| TraesCS7D01G319600.1 | Wheat | nucleus | 12.59 | 11.67 |
| TraesCS1D01G367700.1 | Wheat | nucleus | 15.31 | 11.22 |
| TraesCS3D01G208500.2 | Wheat | mitochondrion | 14.63 | 9.07 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G256300.1 | EnsemblPlantsGene:TraesCS6D01G256300 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF19 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| TIGR:cd00083 | MapMan:15.5.32 | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:362634399..362635487
Molecular Weight (calculated)
31250.5 Da
IEP (calculated)
5.188
GRAVY (calculated)
-0.416
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MALVREPMLM YDGGFDAEAS AFDGLGYGGH DALLGGVDAA ALWGYAYAQD EPAGAASAYV RDSASWASAG PSVLSFRHGA RGHAAQQEVV EEEPDCDAWV
101: DDMDVDQGHQ HAAPALTIGF DPATGCFSLT QSSVGARRPF GLLFPSTSNG SPDAAAPARG SSKRSYAARV QDQDAEPRAT KKPCDASRKT SKAKPAAPTT
201: TSPKGDPQSL TAKNRREKIS ERLRTLQELV PNGTKVDMVT MLEKAFSYVK FLQLQVKVLA MDEFWPAQGG TAPEISQVKE ALDAILSSQR GQLN
101: DDMDVDQGHQ HAAPALTIGF DPATGCFSLT QSSVGARRPF GLLFPSTSNG SPDAAAPARG SSKRSYAARV QDQDAEPRAT KKPCDASRKT SKAKPAAPTT
201: TSPKGDPQSL TAKNRREKIS ERLRTLQELV PNGTKVDMVT MLEKAFSYVK FLQLQVKVLA MDEFWPAQGG TAPEISQVKE ALDAILSSQR GQLN
001: MSLINEHCNE RNYISTPNSS EDLSSPQNCG LDEGASASSS STINSDHQNN QGFVFYPSGE TIEDHNSLMD FNASSFFTFD NHRSLISPVT NGGAFPVVDG
101: NMSYSYDGWS HHQVDSISPR VIKTPNSFET TSSFGLTSNS MSKPATNHGN GDWLYSGSTI VNIGSRHEST SPKLAGNKRP FTGENTQLSK KPSSGTNGKI
201: KPKATTSPKD PQSLAAKNRR ERISERLKVL QELVPNGTKV DLVTMLEKAI GYVKFLQVQV KVLAADEFWP AQGGKAPDIS QVKEAIDAIL SSSQRDSNST
301: RETSIAE
101: NMSYSYDGWS HHQVDSISPR VIKTPNSFET TSSFGLTSNS MSKPATNHGN GDWLYSGSTI VNIGSRHEST SPKLAGNKRP FTGENTQLSK KPSSGTNGKI
201: KPKATTSPKD PQSLAAKNRR ERISERLKVL QELVPNGTKV DLVTMLEKAI GYVKFLQVQV KVLAADEFWP AQGGKAPDIS QVKEAIDAIL SSSQRDSNST
301: RETSIAE
Arabidopsis Description
BHLH86RSL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.