Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G406100.1 | Wheat | nucleus | 83.33 | 90.91 |
| TraesCS5A01G401300.1 | Wheat | nucleus | 86.0 | 89.27 |
| HORVU1Hr1G043780.1 | Barley | mitochondrion, nucleus | 15.67 | 78.33 |
| HORVU5Hr1G097520.1 | Barley | nucleus | 73.0 | 75.0 |
| GSMUA_Achr4P23240_001 | Banana | nucleus | 22.67 | 46.58 |
| TraesCS1D01G347900.1 | Wheat | nucleus | 26.0 | 41.94 |
| EER93400 | Sorghum | nucleus | 37.33 | 38.36 |
| CDY15706 | Canola | nucleus | 26.67 | 37.74 |
| CDX90106 | Canola | nucleus | 26.67 | 37.56 |
| CDY03948 | Canola | cytosol | 17.0 | 35.17 |
| CDY27630 | Canola | nucleus | 27.67 | 34.3 |
| Bra032846.1-P | Field mustard | nucleus | 27.67 | 34.02 |
| TraesCS5D01G078800.1 | Wheat | nucleus | 32.67 | 33.91 |
| Bra030063.1-P | Field mustard | nucleus | 28.67 | 33.73 |
| CDX84906 | Canola | nucleus | 27.33 | 33.61 |
| TraesCS3D01G433200.1 | Wheat | nucleus | 28.33 | 33.33 |
| Bra010921.1-P | Field mustard | nucleus | 28.33 | 33.2 |
| AT1G27740.1 | Thale cress | nucleus | 28.33 | 32.95 |
| CDY11768 | Canola | nucleus | 28.0 | 32.81 |
| GSMUA_Achr9P09600_001 | Banana | nucleus | 29.33 | 31.88 |
| AT5G43175.1 | Thale cress | nucleus | 23.33 | 31.39 |
| CDY11802 | Canola | nucleus | 24.0 | 31.3 |
| TraesCS4D01G079500.1 | Wheat | nucleus | 30.67 | 29.39 |
| TraesCS2D01G193700.1 | Wheat | nucleus | 29.33 | 29.14 |
| TraesCS4D01G257100.1 | Wheat | nucleus | 31.67 | 28.7 |
| TraesCS6D01G256400.1 | Wheat | nucleus | 20.67 | 22.55 |
| TraesCS6D01G256600.1 | Wheat | nucleus | 21.67 | 22.49 |
| TraesCS6D01G256300.1 | Wheat | nucleus | 21.33 | 21.77 |
| TraesCS6D01G256500.1 | Wheat | cytosol | 19.67 | 20.85 |
| TraesCS3D01G004300.1 | Wheat | cytosol, nucleus, plastid | 19.0 | 20.73 |
| TraesCS7D01G230600.1 | Wheat | nucleus | 18.33 | 19.23 |
| TraesCS7D01G170900.1 | Wheat | nucleus | 11.33 | 18.38 |
| TraesCS7D01G263400.1 | Wheat | nucleus | 13.0 | 17.73 |
| TraesCS3D01G344600.1 | Wheat | nucleus | 12.0 | 16.9 |
| TraesCS5D01G244000.1 | Wheat | nucleus | 13.0 | 16.6 |
| TraesCS7D01G319600.1 | Wheat | nucleus | 14.33 | 13.56 |
| TraesCS1D01G367700.1 | Wheat | nucleus | 15.67 | 11.72 |
| CDY03946 | Canola | nucleus | 10.67 | 11.64 |
| TraesCS3D01G252700.1 | Wheat | nucleus | 14.33 | 11.14 |
| TraesCS3D01G208500.2 | Wheat | mitochondrion | 13.33 | 8.44 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G411600.1 | EnsemblPlantsGene:TraesCS5D01G411600 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF105 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| TIGR:cd00083 | MapMan:15.5.32 | : | : | : | : |
Description
No Description!
Coordinates
chr5D:+:475000434..475001876
Molecular Weight (calculated)
32617.5 Da
IEP (calculated)
9.584
GRAVY (calculated)
-0.629
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRDQAAVVR PQEAARWSPY HAPDEEESEI VAQFLTAPYP CFDGGCCSYD FLGEPNVSLG INTLSYCGSI DLNLSRKEER VGKRGGNGNM VPGPSPAGRG
101: RVRAGASCLL GDRDRNGDGA AATPKRKVFQ AGNAHDQGGD LGRHKKKARA ADHKATSIDS YSCRVYLRKS VTSKTVQKQR PGSSYFSDES NCSQGNRGEE
201: ANVAGGGTMK ARAGRGSAAD PQSLYAKRRR EKINDRLRAL QKLVPNGTKV DLSTMLEEAV LYVKFLQLQI KVLSSDEMWM YAPLAYSGMS FGIDLRITPQ
101: RVRAGASCLL GDRDRNGDGA AATPKRKVFQ AGNAHDQGGD LGRHKKKARA ADHKATSIDS YSCRVYLRKS VTSKTVQKQR PGSSYFSDES NCSQGNRGEE
201: ANVAGGGTMK ARAGRGSAAD PQSLYAKRRR EKINDRLRAL QKLVPNGTKV DLSTMLEEAV LYVKFLQLQI KVLSSDEMWM YAPLAYSGMS FGIDLRITPQ
001: MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSSSET TATLTAYHHQ GSQWNGGFCF SQESSSYSGY CAAMPRQEED NNGMEDATIN TNLYLVGEET
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IGG9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.