Factsheet for Bra030063.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15706	Canola	nucleus	83.14	100.0
Bra032846.1-P	Field mustard	nucleus	79.22	82.79
Bra010921.1-P	Field mustard	nucleus	81.18	80.86
AT1G27740.1	Thale cress	nucleus	80.39	79.46
HORVU1Hr1G043780.1	Barley	mitochondrion, nucleus	14.51	61.67
GSMUA_Achr4P23240_001	Banana	nucleus	28.63	50.0
TraesCS1B01G359000.1	Wheat	nucleus	30.59	41.94
TraesCS1D01G347900.1	Wheat	nucleus	29.8	40.86
TraesCS1A01G345200.1	Wheat	nucleus	29.8	40.86
OQU83893	Sorghum	nucleus	30.2	31.82
TraesCS5B01G406100.1	Wheat	nucleus	33.33	30.91
TraesCS3A01G440600.1	Wheat	nucleus	30.59	30.71
GSMUA_Achr9P09600_001	Banana	nucleus	32.94	30.43
Zm00001d048786_P001	Maize	nucleus, plastid	27.45	30.04
TraesCS3B01G474700.1	Wheat	nucleus	29.8	29.92
TraesCS3D01G433200.1	Wheat	nucleus	29.8	29.8
EER93400	Sorghum	nucleus	34.12	29.79
TraesCS5A01G401300.1	Wheat	nucleus	33.33	29.41
TraesCS5D01G411600.1	Wheat	nucleus	33.73	28.67
GSMUA_Achr6P07760_001	Banana	nucleus	32.16	28.57
HORVU5Hr1G097520.1	Barley	nucleus	32.16	28.08
Bra039819.1-P	Field mustard	nucleus	36.08	26.59
Bra034587.1-P	Field mustard	nucleus	36.08	26.59
Bra036969.1-P	Field mustard	nucleus	36.08	26.29
Bra011476.1-P	Field mustard	nucleus	35.29	25.94
Os11t0634700-00	Rice	extracellular	33.73	23.96
Bra036071.1-P	Field mustard	nucleus	17.25	20.66
Bra028620.1-P	Field mustard	nucleus	17.25	20.56
Bra037128.1-P	Field mustard	cytoskeleton, cytosol, nucleus	16.47	20.49
Bra030002.1-P	Field mustard	nucleus	18.04	20.0
Bra012128.1-P	Field mustard	nucleus	16.86	19.63
Bra028895.1-P	Field mustard	nucleus, plastid	13.33	19.21
Bra019708.1-P	Field mustard	nucleus	22.75	18.89
Bra000979.1-P	Field mustard	cytosol	13.33	18.38
Bra036801.1-P	Field mustard	nucleus	16.47	18.18
Bra004169.1-P	Field mustard	nucleus	16.47	15.67
Bra001826.1-P	Field mustard	nucleus	17.25	13.58
Bra031275.1-P	Field mustard	nucleus	17.25	13.25
HORVU6Hr1G069690.3	Barley	cytosol	11.76	8.9

Protein Annotations

EnsemblPlants:Bra030063.1	EnsemblPlants:Bra030063.1-P	EnsemblPlantsGene:Bra030063	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR16223	PANTHER:PTHR16223:SF105	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000254113A	UniProt:M4EMP3	MapMan:15.5.32	:	:

Description

AT1G27740 (E=2e-104) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA07:-:6857986..6859314

Molecular Weight (calculated)

29088.3 Da

IEP (calculated)

7.440

GRAVY (calculated)

-0.680

Length

255 amino acids

Sequence
(BLAST)

001: MDLFVDGELE SLLWMFNSDQ CSSSKEDRPR DEILGLSSLY NDHLHHHQNN VSSSNHHTLL IPDMFPLGAM LGGNLPTTLD SWDQNHLQET ATLKRKHLNL
101: ENLHNTYSNC DTTRQELVKA KKKQRVNPET DTVYQSNTSW RHGQSISTIS VEEKASVASA KGKTRATKGQ ATDPQSLYAR KRREKINERL RTLQNLVPNG
201: TKVDISTMLE EAVNYVKFLQ LQIKLLSSDD LWMYAPLAYN GIDMGFHHNL LSRLT

Best Arabidopsis Sequence Match ( AT1G27740.1 )
(BLAST)

001: MDVFVDGELE SLLGMFNFDQ CSSSKEERPR DELLGLSSLY NGHLHQHQHH NNVLSSDHHA FLLPDMFPFG AMPGGNLPAM LDSWDQSHHL QETSSLKRKL
101: LDVENLCKTN SNCDVTRQEL AKSKKKQRVS SESNTVDESN TNWVDGQSLS NSSDDEKASV TSVKGKTRAT KGTATDPQSL YARKRREKIN ERLKTLQNLV
201: PNGTKVDIST MLEEAVHYVK FLQLQIKLLS SDDLWMYAPL AYNGLDMGFH HNLLSRLM

Arabidopsis Description

BHLH54Transcription factor bHLH54 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEG1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.