Factsheet for Os11t0634700-00

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

extracellular: 24083427

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G474700.1	Wheat	nucleus	44.29	62.6
TraesCS3A01G440600.1	Wheat	nucleus	44.29	62.6
TraesCS3D01G433200.1	Wheat	nucleus	43.73	61.57
OQU83893	Sorghum	nucleus	28.13	41.74
CDY15706	Canola	nucleus	22.84	38.68
CDX90106	Canola	nucleus	22.84	38.5
CDY03948	Canola	cytosol	15.32	37.93
Zm00001d048786_P001	Maize	nucleus, plastid	23.4	36.05
CDY27630	Canola	nucleus	24.23	35.95
Bra032846.1-P	Field mustard	nucleus	24.23	35.66
CDX84906	Canola	nucleus	24.23	35.66
AT5G43175.1	Thale cress	nucleus	22.01	35.43
AT1G27740.1	Thale cress	nucleus	25.35	35.27
CDY11768	Canola	nucleus	24.51	34.38
Bra010921.1-P	Field mustard	nucleus	24.51	34.38
Bra030063.1-P	Field mustard	nucleus	23.96	33.73
GSMUA_Achr6P07760_001	Banana	nucleus	25.91	32.4
CDY11802	Canola	nucleus	20.33	31.74
Os12t0589000-00	Rice	nucleus	24.23	28.62
Os03t0205300-00	Rice	nucleus	25.91	27.27
Os07t0588400-00	Rice	nucleus	22.28	27.12
Os09t0455300-01	Rice	nucleus	12.81	19.49
Os02t0710300-01	Rice	nucleus	15.04	18.0
Os01t0111500-01	Rice	nucleus	14.48	17.63
Os01t0831000-01	Rice	nucleus	9.47	15.81
Os06t0496400-01	Rice	nucleus	12.81	15.65
Os08t0108500-01	Rice	nucleus	12.53	14.71
CDY03946	Canola	nucleus	8.64	11.27
Os01t0707500-01	Rice	nucleus	11.98	10.94
Os05t0541400-00	Rice	nucleus	12.26	10.58
Os01t0566800-00	Rice	nucleus	13.65	10.52

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A0P0Y4I9	ProteinID:BAT14964.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlantsGene:Os11g0634700
EnsemblPlants:Os11t0634700-00	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF99	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0003939A7E	InterPro:bHLH_dom	SEG:seg	:	:

Description

basic helix-loop-helix protein 132, ROOT HAIR DEFECTIVE-SIX LIKE 7Similar to Helix-loop-helix DNA-binding domain containing protein. (Os11t0634700-00)

Coordinates

chr11:+:24980227..24984249

Molecular Weight (calculated)

40167.3 Da

IEP (calculated)

7.251

GRAVY (calculated)

-0.527

Length

359 amino acids

Sequence
(BLAST)

001: MRGTQSTVEL TYFVDCLTTT SLQTPWLLAA SSLNLADSGR NQPVSDRYLL VPHFAAAHRP LVASPASATN PSAHRNNSKR SHITTLFKRS QIRAWKFQIN
101: RMDARCANIW SSADARSEES EMIDQLKSMF WSSTDAEINF YSPDSSVNSC VTTSTMPSSL FLPLMDDEGF GTVQLMVSTG MDMCSDHQHQ VITGNKRMFP
201: MDEHFEQQQK KPKKKTRTSR SVSSSSTITD YETSSELVNP SCSSGSSVGE DSIAATDGSV VLKQSDNSRG HKQCSKDTQS LYAKRRRERI NERLRILQQL
301: VPNGTKVDIS TMLEEAVQYV KFLQLQIKLL SSDDTWMFAP LAYNGMNMDL GHTLAENQE

Best Arabidopsis Sequence Match ( AT4G33880.1 )
(BLAST)

001: MEAMGEWSNN LGGMYTYATE EADFMNQLLA SYDHPGTGSS SGAAASGDHQ GLYWNLGSHH NHLSLVSEAG SFCFSQESSS YSAGNSGYYT VVPPTVEENQ
101: NETMDFGMED VTINTNSYLV GEETSECDVE KYSSGKTLMP LETVVENHDD EESLLQSEIS VTTTKSLTGS KKRSRATSTD KNKRARVNKR AQKNVEMSGD
201: NNEGEEEEGE TKLKKRKNGA MMSRQNSSTT FCTEEESNCA DQDGGGEDSS SKEDDPSKAL NLNGKTRASR GAATDPQSLY ARKRRERINE RLRILQNLVP
301: NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DDLWMYAPIA FNGMDIGLSS PR

Arabidopsis Description

BHLH85Transcription factor bHLH85 [Source:UniProtKB/Swiss-Prot;Acc:Q84WK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.