Factsheet for Zm00001d048786_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU83893	Sorghum	nucleus	74.25	71.49
TraesCS3B01G474700.1	Wheat	nucleus	38.2	35.04
TraesCS3D01G433200.1	Wheat	nucleus	38.2	34.9
TraesCS3A01G440600.1	Wheat	nucleus	37.77	34.65
CDY03948	Canola	cytosol	21.03	33.79
CDX90106	Canola	nucleus	29.18	31.92
CDY15706	Canola	nucleus	27.04	29.72
AT5G43175.1	Thale cress	nucleus	27.9	29.15
Bra010921.1-P	Field mustard	nucleus	31.76	28.91
CDY11768	Canola	nucleus	31.76	28.91
CDY27630	Canola	nucleus	29.61	28.51
Bra032846.1-P	Field mustard	nucleus	29.61	28.28
CDX84906	Canola	nucleus	29.61	28.28
AT1G27740.1	Thale cress	nucleus	30.9	27.91
GSMUA_Achr6P07760_001	Banana	nucleus	33.91	27.53
Bra030063.1-P	Field mustard	nucleus	30.04	27.45
CDY11802	Canola	nucleus	26.18	26.52
Zm00001d041351_P001	Maize	nucleus	33.48	25.66
Zm00001d006733_P001	Maize	nucleus	30.04	24.48
Os11t0634700-00	Rice	extracellular	36.05	23.4
Zm00001d021988_P001	Maize	nucleus	29.18	23.05
Zm00001d028085_P001	Maize	nucleus	24.46	19.26
Zm00001d048141_P001	Maize	cytosol	24.46	18.04
Zm00001d017804_P001	Maize	nucleus	21.03	16.61
Zm00001d020705_P001	Maize	nucleus	17.17	16.53
Zm00001d005841_P001	Maize	nucleus	16.74	16.12
Zm00001d050016_P001	Maize	nucleus	16.31	15.77
Zm00001d042988_P001	Maize	nucleus, plastid	13.73	15.17
Zm00001d042989_P001	Maize	nucleus, plastid	13.73	15.17
Zm00001d008444_P001	Maize	nucleus	20.6	14.77
Zm00001d031781_P001	Maize	nucleus	15.45	14.34
Zm00001d049721_P001	Maize	nucleus	13.3	10.8
Zm00001d035027_P001	Maize	nucleus	13.73	9.55
Zm00001d038863_P001	Maize	nucleus	15.88	9.34
Zm00001d011187_P001	Maize	nucleus	17.17	9.3
Zm00001d043699_P001	Maize	nucleus	16.74	9.24
CDY03946	Canola	nucleus	9.87	8.36
Zm00001d044242_P001	Maize	nucleus	15.02	7.28

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A1D6PQ35	ProteinID:AQK48902.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF99	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000843FBF5	EnsemblPlantsGene:Zm00001d048786	EnsemblPlants:Zm00001d048786_P001	EnsemblPlants:Zm00001d048786_T001	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

bHLH-transcription factor 38Putative HLH DNA-binding domain superfamily protein

Coordinates

chr4:-:5537283..5538661

Molecular Weight (calculated)

25710.3 Da

IEP (calculated)

7.824

GRAVY (calculated)

-0.560

Length

233 amino acids

Sequence
(BLAST)

001: MFWSGSNADA CLSSPNSSAS SCVEPSTSPT ALFLPLAENQ RCDKEQCQNT GAVRCFGHKS QVLAPITNEV TANKRVCLMD ENRKSTDAKR PCTVPPWVSR
101: KNSIAPADEI NTTEPVNKSC SWCCSSEDDS AGACEEPIVL KQSTSSRGPS RSSKDSQSLY AKRRRERINE KLRTLQQLIP NGTKVDMSTM LEEAVQYVKF
201: LQLQIKLLSS EETWMYAPLA YTHLGPNVAV NQP

Best Arabidopsis Sequence Match ( AT2G14760.1 )
(BLAST)

001: MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSSSET TATLTAYHHQ GSQWNGGFCF SQESSSYSGY CAAMPRQEED NNGMEDATIN TNLYLVGEET
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR

Arabidopsis Description

Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IGG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.