Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG39918 | Sorghum | nucleus | 84.12 | 77.33 |
| Zm00001d048141_P001 | Maize | cytosol | 82.09 | 76.9 |
| TraesCS4D01G257100.1 | Wheat | nucleus | 50.34 | 45.02 |
| TraesCS4A01G047700.1 | Wheat | nucleus | 50.0 | 44.98 |
| HORVU4Hr1G069820.2 | Barley | nucleus | 50.0 | 44.98 |
| TraesCS4B01G257200.1 | Wheat | nucleus | 50.0 | 44.71 |
| Os03t0205300-00 | Rice | nucleus | 50.68 | 43.99 |
| Zm00001d006733_P001 | Maize | nucleus | 27.36 | 28.32 |
| Zm00001d021988_P001 | Maize | nucleus | 27.36 | 27.46 |
| Zm00001d048786_P001 | Maize | nucleus, plastid | 19.26 | 24.46 |
| Zm00001d041351_P001 | Maize | nucleus | 25.0 | 24.34 |
| Zm00001d020705_P001 | Maize | nucleus | 12.84 | 15.7 |
| Zm00001d017804_P001 | Maize | nucleus | 14.86 | 14.92 |
| Zm00001d008444_P001 | Maize | nucleus | 15.54 | 14.15 |
| Zm00001d050016_P001 | Maize | nucleus | 11.15 | 13.69 |
| Zm00001d005841_P001 | Maize | nucleus | 10.81 | 13.22 |
| Zm00001d031781_P001 | Maize | nucleus | 11.15 | 13.15 |
| Zm00001d042988_P001 | Maize | nucleus, plastid | 8.78 | 12.32 |
| Zm00001d042989_P001 | Maize | nucleus, plastid | 8.78 | 12.32 |
| Zm00001d049721_P001 | Maize | nucleus | 10.47 | 10.8 |
| Zm00001d035027_P001 | Maize | nucleus | 11.82 | 10.45 |
| Zm00001d038863_P001 | Maize | nucleus | 13.51 | 10.1 |
| Zm00001d011187_P001 | Maize | nucleus | 11.82 | 8.14 |
| Zm00001d043699_P001 | Maize | nucleus | 10.81 | 7.58 |
| Zm00001d044242_P001 | Maize | nucleus | 12.16 | 7.48 |
Protein Annotations
| EnsemblPlants:Zm00001d028085_P001 | EnsemblPlants:Zm00001d028085_T001 | EnsemblPlantsGene:Zm00001d028085 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | PANTHER:PTHR16223 | PANTHER:PTHR16223:SF9 | ProteinID:ONL94668.1 | SEG:seg | UniParc:UPI0002207CC1 |
| UniProt:A0A1D6JRW2 | MapMan:15.5.32 | : | : | : | : |
Description
Transcription factor bHLH54
Coordinates
chr1:+:22422888..22424315
Molecular Weight (calculated)
32423.3 Da
IEP (calculated)
4.562
GRAVY (calculated)
-0.750
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MESSEASWHW HSFDPSVAVE DSEAMVQLLG VQYSGNEQKQ TTPTAMSWPG QEADQYYSST ACPYYMQTQQ PNPGASFYDH GYYGSNTFTM TGDFFVPEEQ
101: MLDLNLDFEY QGGEGTCYGR GGGNTPAVCK RKLENQKDES ATCTVPKKKS RSAAVPQAQK KRKTAQKGAC SRGNQEESYG DDGGNAKQQQ QCSNDYLSDD
201: DDSLEMIACG NVSSASKKSS SSACGKARAG RGATTDPQSL YARVDISTML EEAVQYVKFL QLQIKLLSSD DMWMFAPIAY NGVNVGLDLK ISPPQQ
101: MLDLNLDFEY QGGEGTCYGR GGGNTPAVCK RKLENQKDES ATCTVPKKKS RSAAVPQAQK KRKTAQKGAC SRGNQEESYG DDGGNAKQQQ QCSNDYLSDD
201: DDSLEMIACG NVSSASKKSS SSACGKARAG RGATTDPQSL YARVDISTML EEAVQYVKFL QLQIKLLSSD DMWMFAPIAY NGVNVGLDLK ISPPQQ
001: MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSSSET TATLTAYHHQ GSQWNGGFCF SQESSSYSGY CAAMPRQEED NNGMEDATIN TNLYLVGEET
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IGG9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.