CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028085_P001	Maize	nucleus	77.33	84.12
Zm00001d048141_P001	Maize	cytosol	79.19	80.7
HORVU4Hr1G069820.2	Barley	nucleus	54.66	53.5
TraesCS4A01G047700.1	Wheat	nucleus	54.35	53.19
TraesCS4D01G257100.1	Wheat	nucleus	54.66	53.17
TraesCS4B01G257200.1	Wheat	nucleus	53.73	52.27
Os03t0205300-00	Rice	nucleus	54.04	51.03
EER91225	Sorghum	nucleus	34.78	37.33
EES17296	Sorghum	nucleus	35.71	36.39
OQU83893	Sorghum	nucleus	27.33	36.36
EER99632	Sorghum	nucleus	31.68	36.17
EER93400	Sorghum	nucleus	32.3	35.62
EES00435	Sorghum	nucleus	18.63	20.69
EES07381	Sorghum	nucleus	18.63	19.61
EER96848	Sorghum	nucleus	15.84	19.54
EES15124	Sorghum	nucleus	15.22	18.22
EES14382	Sorghum	nucleus	15.84	14.66
EES18589	Sorghum	nucleus	15.84	12.72
KXG33221	Sorghum	nucleus	14.91	11.48
OQU87789	Sorghum	cytosol	4.97	11.19
OQU87026	Sorghum	nucleus	14.6	10.2

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A1B6QPS0	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0007275	GO:GO:0008150	GO:GO:0009555	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	EnsemblPlants:KXG39918	ProteinID:KXG39918	ProteinID:KXG39918.1	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR16223	PANTHER:PTHR16223:SF9	SMART:SM00353	EnsemblPlantsGene:SORBI_3001G464300	SUPFAM:SSF47459	UniParc:UPI00081ABE24
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:73836534..73838246

Molecular Weight (calculated)

35222.0 Da

IEP (calculated)

5.846

GRAVY (calculated)

-0.765

Length

322 amino acids

Sequence
(BLAST)

001: MESSEASWHS FDPSVAVEDS ETMAQLLGVQ YSGNEQKQPT PTAMYWPGQE TDQYYSSAAY PYYMQMQQHN SGASCYDHGY YGSNTFTMTG GDFFVPEEQI
101: MAADPSFMLD LNLDFEYQDG EGAGRGCGGG NTPAIGKRKR EDQKGESTTC TVPKKKSRST AIPVQKKGKK AQKGRCSRGN QEESNGGGDV ARQQQCSSNG
201: YLSDDESLEM TACSNVSSAS KKSSSSAGGK ARAGRGAAID PQSLYARKRR ERINERLKVL QNLVPNGTKV DISTMLEEAA QYVKFLQLQI KLLSSDDMWM
301: FAPIAYNGVN VGLDLKISPP QQ

Best Arabidopsis Sequence Match ( AT2G14760.1 )
(BLAST)

001: MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSSSET TATLTAYHHQ GSQWNGGFCF SQESSSYSGY CAAMPRQEED NNGMEDATIN TNLYLVGEET
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR

Arabidopsis Description

Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IGG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.