Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G50330.1 | EER96848 | AT3G50330.1 | 21798944 |
| AT3G50330.1 | EES15124 | AT3G50330.1 | 21798944 |
| AT3G50330.1 | KXG31309 | AT4G36930.1 | 17855426 |
| AT3G50330.1 | OQU75890 | AT4G36930.1 | 17855426 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d050016_P001 | Maize | nucleus | 77.7 | 86.72 |
| Zm00001d031781_P001 | Maize | nucleus | 69.89 | 74.9 |
| HORVU7Hr1G054880.1 | Barley | nucleus | 60.22 | 72.97 |
| TraesCS7B01G160500.1 | Wheat | nucleus | 59.48 | 72.4 |
| TraesCS7A01G262600.1 | Wheat | nucleus | 59.11 | 72.27 |
| TraesCS7D01G263400.1 | Wheat | nucleus | 59.11 | 72.27 |
| Solyc12g088790.1.1 | Tomato | nucleus | 29.0 | 64.46 |
| PGSC0003DMT400048857 | Potato | nucleus | 29.37 | 53.38 |
| EER96848 | Sorghum | nucleus | 51.3 | 52.87 |
| GSMUA_Achr9P15380_001 | Banana | nucleus | 43.12 | 47.35 |
| CDY18636 | Canola | nucleus | 35.32 | 46.34 |
| CDX81342 | Canola | cytoskeleton, cytosol, nucleus | 35.32 | 45.89 |
| Bra037128.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 34.94 | 45.85 |
| Bra036071.1-P | Field mustard | nucleus | 35.32 | 44.6 |
| CDY30593 | Canola | nucleus | 34.94 | 44.13 |
| CDY43559 | Canola | nucleus | 37.55 | 43.72 |
| CDY63952 | Canola | nucleus | 37.55 | 43.72 |
| Bra036801.1-P | Field mustard | nucleus | 37.55 | 43.72 |
| CDX68583 | Canola | nucleus | 36.06 | 42.73 |
| CDX83121 | Canola | nucleus | 36.43 | 42.61 |
| Bra030002.1-P | Field mustard | nucleus | 36.43 | 42.61 |
| CDY01443 | Canola | nucleus | 34.57 | 42.47 |
| CDY12799 | Canola | nucleus | 34.2 | 42.2 |
| Bra012128.1-P | Field mustard | nucleus | 34.2 | 42.01 |
| CDY17765 | Canola | nucleus | 34.94 | 41.59 |
| AT3G50330.1 | Thale cress | nucleus | 35.69 | 41.56 |
| AT5G67060.1 | Thale cress | nucleus | 37.17 | 41.49 |
| PGSC0003DMT400010344 | Potato | nucleus | 33.83 | 40.62 |
| KRH28464 | Soybean | nucleus | 36.43 | 40.5 |
| KRH77007 | Soybean | nucleus | 36.43 | 39.04 |
| KRH57944 | Soybean | nucleus | 34.94 | 37.01 |
| KRH04603 | Soybean | nucleus | 36.43 | 34.75 |
| EES14382 | Sorghum | nucleus | 30.48 | 23.56 |
| EES18589 | Sorghum | nucleus | 28.25 | 18.95 |
| OQU83893 | Sorghum | nucleus | 15.61 | 17.36 |
| KXG33221 | Sorghum | nucleus | 26.77 | 17.22 |
| EER99632 | Sorghum | nucleus | 16.36 | 15.6 |
| OQU87789 | Sorghum | cytosol | 8.18 | 15.38 |
| EER91225 | Sorghum | nucleus | 17.1 | 15.33 |
| KXG39918 | Sorghum | nucleus | 18.22 | 15.22 |
| EES17296 | Sorghum | nucleus | 17.84 | 15.19 |
| EER93400 | Sorghum | nucleus | 16.36 | 15.07 |
| EES07381 | Sorghum | nucleus | 17.1 | 15.03 |
| EES00435 | Sorghum | nucleus | 15.24 | 14.14 |
| OQU87026 | Sorghum | nucleus | 23.42 | 13.67 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:8083533 | UniProt:C5YM98 | EnsemblPlants:EES15124 | ProteinID:EES15124 |
| ProteinID:EES15124.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF303 |
| SMART:SM00353 | EnsemblPlantsGene:SORBI_3007G155300 | SUPFAM:SSF47459 | UniParc:UPI0001A87CE3 | RefSeq:XP_002445629.1 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr7:-:58925288..58926097
Molecular Weight (calculated)
28711.7 Da
IEP (calculated)
7.999
GRAVY (calculated)
-0.554
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFDMLNSHP EAQLELMNAM LQLEQLTAFP LPDHHGAMMM VPSSPPSPPG MQQAASHHHH FSSVPHHMSS GANNSGRGGG GGVYNDHHHQ YSQVVTADVS
101: SCNGSARRSD SEYVAHAQQD DHAAGGGGGN YSSGESGGGT AAVGSSAMRE MIFRVAALQP VNIDPEMVRP PKRRNVRIST DPQSVAARMR RERISERIRI
201: LQRLVPGGTK MDTASMLDEA IHYVKFLKTQ VQSLERAAAA SGRRPAVDNG AAGAGAASYS GRMNGGHQW
101: SCNGSARRSD SEYVAHAQQD DHAAGGGGGN YSSGESGGGT AAVGSSAMRE MIFRVAALQP VNIDPEMVRP PKRRNVRIST DPQSVAARMR RERISERIRI
201: LQRLVPGGTK MDTASMLDEA IHYVKFLKTQ VQSLERAAAA SGRRPAVDNG AAGAGAASYS GRMNGGHQW
001: MEKLPEFCNP NSSFFSPDHN NTYPFLFNST HYQSDHSMTN EPGFRYGSGL LTNPSSISPN TAYSSVFLDK RNNSNNNNNG TNMAAMREMI FRIAVMQPIH
101: IDPEAVKPPK RRNVRISKDP QSVAARHRRE RISERIRILQ RLVPGGTKMD TASMLDEAIH YVKFLKKQVQ SLEEQAVVTG GGGGGGGRVL IGGGGMTAAS
201: GGGGGGGVVM KGCGTVGTHQ MVGNAQILR
101: IDPEAVKPPK RRNVRISKDP QSVAARHRRE RISERIRILQ RLVPGGTKMD TASMLDEAIH YVKFLKKQVQ SLEEQAVVTG GGGGGGGRVL IGGGGMTAAS
201: GGGGGGGVVM KGCGTVGTHQ MVGNAQILR
Arabidopsis Description
HEC1HEC1 [Source:UniProtKB/TrEMBL;Acc:A0A178UR10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.