CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G078800.1	Wheat	nucleus	58.54	64.01
TraesCS5A01G067600.1	Wheat	nucleus	57.91	63.1
TraesCS5B01G074500.1	Wheat	nucleus	57.59	62.76
Os12t0589000-00	Rice	nucleus	58.86	61.18
EER91225	Sorghum	nucleus	50.63	53.33
HORVU5Hr1G018100.1	Barley	cytosol, mitochondrion, nucleus	52.22	52.88
Zm00001d041351_P001	Maize	nucleus	39.56	41.12
PGSC0003DMT400030165	Potato	nucleus	22.15	38.46
OQU83893	Sorghum	nucleus	28.16	36.78
KXG39918	Sorghum	nucleus	36.39	35.71
EER99632	Sorghum	nucleus	30.7	34.4
EER93400	Sorghum	nucleus	31.33	33.9
Solyc04g077960.1.1	Tomato	nucleus	34.81	30.99
PGSC0003DMT400055446	Potato	nucleus	34.49	30.19
Solyc12g088380.1.1	Tomato	nucleus	25.0	28.52
EES00435	Sorghum	nucleus	18.67	20.34
EES07381	Sorghum	nucleus	18.04	18.63
EER96848	Sorghum	nucleus	15.19	18.39
EES15124	Sorghum	nucleus	15.19	17.84
EES18589	Sorghum	nucleus	17.41	13.72
KXG33221	Sorghum	nucleus	17.41	13.16
EES14382	Sorghum	nucleus	13.92	12.64
OQU87789	Sorghum	cytosol	5.06	11.19
OQU87026	Sorghum	nucleus	12.97	8.89

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:8074300	UniProt:C5YQV8	EnsemblPlants:EES17296	ProteinID:EES17296
ProteinID:EES17296.1	GO:GO:0001046	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF61	SMART:SM00353	EnsemblPlantsGene:SORBI_3008G147800
SUPFAM:SSF47459	UniParc:UPI0001A880D0	RefSeq:XP_002443458.1	InterPro:bHLH_dom	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:-:58124661..58127849

Molecular Weight (calculated)

34398.7 Da

IEP (calculated)

4.838

GRAVY (calculated)

-0.710

Length

316 amino acids

Sequence
(BLAST)

001: MEAGGLITEV GWTEFDFLSH GEESEAMMAQ LLGAFPSHAD EGQHELLHWP DQASNAYSDS IPPSCGGYYF LSNSNEALGS SSCTAPTDAL PFQEEHGAGA
101: AEYLDVTANH SFNCYGNGDP SYEDLDDPMS VSMLGSVSTA PDKSKRKHMV EEHDGQTQKR GRKSARNVGE AKRAKRAKKS GDEDSSMAIR NGSPTSCCTS
201: DSDSNASLES ADGDGDADAR RPKGKGRAGR SATTEPQSIY ARKRRERINE RLKILQNLVP NGTKVDISTM LEEAVHYVKF LQLQIRLLSS DDTWMYAPIA
301: YNGMNIGIGI DLNMDR

Best Arabidopsis Sequence Match ( AT4G33880.1 )
(BLAST)

001: MEAMGEWSNN LGGMYTYATE EADFMNQLLA SYDHPGTGSS SGAAASGDHQ GLYWNLGSHH NHLSLVSEAG SFCFSQESSS YSAGNSGYYT VVPPTVEENQ
101: NETMDFGMED VTINTNSYLV GEETSECDVE KYSSGKTLMP LETVVENHDD EESLLQSEIS VTTTKSLTGS KKRSRATSTD KNKRARVNKR AQKNVEMSGD
201: NNEGEEEEGE TKLKKRKNGA MMSRQNSSTT FCTEEESNCA DQDGGGEDSS SKEDDPSKAL NLNGKTRASR GAATDPQSLY ARKRRERINE RLRILQNLVP
301: NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DDLWMYAPIA FNGMDIGLSS PR

Arabidopsis Description

BHLH85Transcription factor bHLH85 [Source:UniProtKB/Swiss-Prot;Acc:Q84WK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.