Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G50330.1 | EER96848 | AT3G50330.1 | 21798944 |
| AT3G50330.1 | EES15124 | AT3G50330.1 | 21798944 |
| AT3G50330.1 | KXG31309 | AT4G36930.1 | 17855426 |
| AT3G50330.1 | OQU75890 | AT4G36930.1 | 17855426 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d020705_P001 | Maize | nucleus | 83.14 | 89.67 |
| TraesCS5D01G244000.1 | Wheat | nucleus | 65.13 | 72.34 |
| TraesCS5A01G237500.1 | Wheat | nucleus | 65.13 | 72.34 |
| TraesCS5B01G235200.1 | Wheat | nucleus | 64.75 | 71.91 |
| HORVU5Hr1G068110.1 | Barley | nucleus | 65.52 | 71.85 |
| TraesCS6A01G142000.1 | Wheat | nucleus | 64.37 | 71.49 |
| Os09t0455300-01 | Rice | nucleus | 64.37 | 71.19 |
| Solyc12g088790.1.1 | Tomato | nucleus | 28.74 | 61.98 |
| PGSC0003DMT400048857 | Potato | nucleus | 30.27 | 53.38 |
| EES15124 | Sorghum | nucleus | 52.87 | 51.3 |
| GSMUA_Achr9P15380_001 | Banana | nucleus | 45.98 | 48.98 |
| Bra037128.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 36.02 | 45.85 |
| CDY18636 | Canola | nucleus | 35.63 | 45.37 |
| CDX81342 | Canola | cytoskeleton, cytosol, nucleus | 35.63 | 44.93 |
| Bra036071.1-P | Field mustard | nucleus | 34.87 | 42.72 |
| CDY12799 | Canola | nucleus | 35.63 | 42.66 |
| Bra012128.1-P | Field mustard | nucleus | 35.63 | 42.47 |
| CDY01443 | Canola | nucleus | 35.63 | 42.47 |
| CDY30593 | Canola | nucleus | 34.48 | 42.25 |
| CDX68583 | Canola | nucleus | 35.63 | 40.97 |
| CDY63952 | Canola | nucleus | 36.02 | 40.69 |
| CDY43559 | Canola | nucleus | 36.02 | 40.69 |
| Bra036801.1-P | Field mustard | nucleus | 36.02 | 40.69 |
| AT3G50330.1 | Thale cress | nucleus | 35.63 | 40.26 |
| Bra030002.1-P | Field mustard | nucleus | 35.25 | 40.0 |
| CDX83121 | Canola | nucleus | 35.25 | 40.0 |
| AT5G67060.1 | Thale cress | nucleus | 36.78 | 39.83 |
| CDY17765 | Canola | nucleus | 34.48 | 39.82 |
| PGSC0003DMT400010344 | Potato | nucleus | 33.72 | 39.29 |
| KRH28464 | Soybean | nucleus | 36.02 | 38.84 |
| KRH77007 | Soybean | nucleus | 36.78 | 38.25 |
| KRH57944 | Soybean | nucleus | 33.33 | 34.25 |
| KRH04603 | Soybean | nucleus | 34.87 | 32.27 |
| EES14382 | Sorghum | nucleus | 31.8 | 23.85 |
| OQU83893 | Sorghum | nucleus | 16.48 | 17.77 |
| EES18589 | Sorghum | nucleus | 27.2 | 17.71 |
| KXG33221 | Sorghum | nucleus | 27.97 | 17.46 |
| KXG39918 | Sorghum | nucleus | 19.54 | 15.84 |
| EES17296 | Sorghum | nucleus | 18.39 | 15.19 |
| EES00435 | Sorghum | nucleus | 16.48 | 14.83 |
| EES07381 | Sorghum | nucleus | 17.24 | 14.71 |
| OQU87789 | Sorghum | cytosol | 8.05 | 14.69 |
| EER91225 | Sorghum | nucleus | 16.48 | 14.33 |
| EER99632 | Sorghum | nucleus | 15.33 | 14.18 |
| EER93400 | Sorghum | nucleus | 15.33 | 13.7 |
| OQU87026 | Sorghum | nucleus | 22.22 | 12.58 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:8081049 | UniProt:C5X2A4 | EnsemblPlants:EER96848 | ProteinID:EER96848 |
| ProteinID:EER96848.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF303 |
| SMART:SM00353 | EnsemblPlantsGene:SORBI_3002G224500 | SUPFAM:SSF47459 | UniParc:UPI0001A835B4 | RefSeq:XP_002460327.1 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr2:+:61637210..61638754
Molecular Weight (calculated)
28043.1 Da
IEP (calculated)
6.801
GRAVY (calculated)
-0.367
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFDLLNYSP EAQLELMNTM LQLEQLTALD AHQSSPMAPV SPPISPVQTH AGHHNSFSPP PPHMSTITTT TAGYPAEQYH TPPAAALYAA ATGGSLDHLQ
101: DCYVLSSSPG PDNNNNNNGG AAAAAALQQA MGSSSPTSAD AMREAIFHIA ALQPVEIDPE AVRPPKRRNV RISKDPQSVA ARLRRERISE RIRTLQRLVP
201: GGTKMDTASM LDEAIHYVKF LKSQVQSLER AAAATHRAAA LGAAYPAFHA PWQYALPHGD M
101: DCYVLSSSPG PDNNNNNNGG AAAAAALQQA MGSSSPTSAD AMREAIFHIA ALQPVEIDPE AVRPPKRRNV RISKDPQSVA ARLRRERISE RIRTLQRLVP
201: GGTKMDTASM LDEAIHYVKF LKSQVQSLER AAAATHRAAA LGAAYPAFHA PWQYALPHGD M
001: MDSDIMNMMM HQMEKLPEFC NPNSSFFSPD HNNTYPFLFN STHYQSDHSM TNEPGFRYGS GLLTNPSSIS PNTAYSSVFL DKRNNSNNNN NGTNMAAMRE
101: MIFRIAVMQP IHIDPEAVKP PKRRNVRISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQSLEEQAVV TGGGGGGGGR
201: VLIGGGGMTA ASGGGGGGGV VMKGCGTVGT HQMVGNAQIL R
101: MIFRIAVMQP IHIDPEAVKP PKRRNVRISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQSLEEQAVV TGGGGGGGGR
201: VLIGGGGMTA ASGGGGGGGV VMKGCGTVGT HQMVGNAQIL R
Arabidopsis Description
HEC1HEC1 [Source:UniProtKB/TrEMBL;Acc:A0A178UR10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.