Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G36930.1 | EER96848 | AT3G50330.1 | 17855426 |
| AT4G36930.1 | EES15124 | AT3G50330.1 | 17855426 |
| AT4G36930.1 | EES14382 | AT5G09750.1 | 17855426 |
| AT4G36930.1 | EER96848 | AT5G67060.1 | 17855426 |
| AT4G36930.1 | EES15124 | AT5G67060.1 | 17855426 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d045212_P001 | Maize | nucleus | 82.47 | 70.8 |
| TraesCS7A01G126900.1 | Wheat | nucleus | 70.45 | 61.93 |
| TraesCS7D01G124700.1 | Wheat | nucleus | 70.79 | 60.95 |
| HORVU7Hr1G026560.2 | Barley | nucleus | 70.45 | 60.65 |
| TraesCS7B01G026300.1 | Wheat | nucleus | 70.1 | 60.18 |
| CDY37185 | Canola | mitochondrion | 19.93 | 59.18 |
| TraesCS6A01G190600.1 | Wheat | nucleus | 26.12 | 58.91 |
| Os06t0164400-01 | Rice | cytosol, mitochondrion, nucleus | 36.77 | 54.31 |
| KRH04711 | Soybean | plastid | 18.56 | 33.75 |
| KRH28453 | Soybean | nucleus | 33.68 | 33.68 |
| KRH04595 | Soybean | nucleus | 31.27 | 33.46 |
| CDY24734 | Canola | plastid | 15.81 | 32.39 |
| AT5G67110.1 | Thale cress | nucleus | 23.02 | 31.9 |
| KXG31309 | Sorghum | nucleus | 31.62 | 31.51 |
| Bra012133.1-P | Field mustard | nucleus, plastid | 23.02 | 31.31 |
| PGSC0003DMT400020534 | Potato | nucleus | 33.68 | 31.21 |
| CDY12804 | Canola | nucleus, plastid | 23.02 | 31.02 |
| Solyc04g078690.2.1 | Tomato | nucleus | 33.33 | 30.89 |
| CDY01438 | Canola | nucleus, plastid | 23.02 | 30.73 |
| KRH05665 | Soybean | nucleus | 29.9 | 29.29 |
| VIT_07s0031g00450.t01 | Wine grape | nucleus, plastid | 38.83 | 28.68 |
| KRH15381 | Soybean | nucleus | 29.21 | 28.62 |
| VIT_18s0001g10270.t01 | Wine grape | nucleus | 36.08 | 28.46 |
| EES11436 | Sorghum | nucleus | 17.53 | 27.13 |
| CDY44048 | Canola | nucleus, plastid | 31.62 | 26.98 |
| Bra010591.1-P | Field mustard | nucleus, plastid | 31.62 | 26.98 |
| KRH77016 | Soybean | nucleus | 34.36 | 26.67 |
| CDY22448 | Canola | nucleus, plastid | 31.62 | 26.14 |
| PGSC0003DMT400010253 | Potato | nucleus | 33.33 | 25.8 |
| Solyc02g093280.2.1 | Tomato | nucleus | 33.33 | 25.66 |
| CDX75629 | Canola | nucleus | 30.24 | 25.43 |
| Bra011740.1-P | Field mustard | nucleus, plastid | 30.58 | 25.14 |
| CDX69281 | Canola | nucleus, plastid | 29.9 | 24.93 |
| AT4G36930.1 | Thale cress | nucleus | 31.62 | 24.66 |
| OQU88567 | Sorghum | nucleus | 15.12 | 15.88 |
| KXG37359 | Sorghum | nucleus | 15.12 | 15.49 |
| KXG23955 | Sorghum | nucleus | 25.09 | 15.37 |
| GSMUA_Achr7P20810_001 | Banana | nucleus | 31.62 | 15.36 |
| OQU88421 | Sorghum | nucleus | 21.31 | 15.01 |
| EES05953 | Sorghum | nucleus | 18.56 | 13.74 |
| OQU92150 | Sorghum | nucleus | 24.74 | 13.41 |
| OQU91282 | Sorghum | nucleus | 23.37 | 12.59 |
| KXG37432 | Sorghum | plastid | 20.27 | 12.24 |
| KXG32305 | Sorghum | nucleus | 24.4 | 11.76 |
| EER89334 | Sorghum | nucleus | 17.53 | 11.41 |
| OQU89497 | Sorghum | nucleus | 17.53 | 10.97 |
| KXG21255 | Sorghum | nucleus | 24.74 | 10.47 |
| KXG30460 | Sorghum | nucleus | 17.53 | 10.08 |
| KXG19523 | Sorghum | nucleus | 15.81 | 9.35 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:8076144 | UniProt:A0A1W0VRK2 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| EnsemblPlants:OQU75890 | ProteinID:OQU75890 | ProteinID:OQU75890.1 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF297 | SMART:SM00353 | EnsemblPlantsGene:SORBI_3010G051800 | SUPFAM:SSF47459 | UniParc:UPI0001A8909B | RefSeq:XP_002436548.1 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr10:+:4047712..4050798
Molecular Weight (calculated)
31729.3 Da
IEP (calculated)
6.130
GRAVY (calculated)
-0.690
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MALLQHHDQR RRQQLEEEED DEAVRRQMFG GLAAYPAALG HGHQVDYGED AGGLGDSDAG GSEPEAPPER TRGGGGSGSK RSRAAEVHNL SEKRRRSKIN
101: EKMKALQSLI PNSNKTDKAS MLDEAIEYLK QLQLQVQMLS MRNGVYLNPP YLSGAIEPAQ ASQMFAALGG GNITASSSGA VMPPVNQSSG VHQAFDPLNP
201: PRNQPLSFVL PNVDKTIQEA PFHLESSQSH LRTFRMPESS EMMLPGEVVA KHQLTSTQER VSLPGIDMNP IRQESSIVNA DHFDGCSHSK E
101: EKMKALQSLI PNSNKTDKAS MLDEAIEYLK QLQLQVQMLS MRNGVYLNPP YLSGAIEPAQ ASQMFAALGG GNITASSSGA VMPPVNQSSG VHQAFDPLNP
201: PRNQPLSFVL PNVDKTIQEA PFHLESSQSH LRTFRMPESS EMMLPGEVVA KHQLTSTQER VSLPGIDMNP IRQESSIVNA DHFDGCSHSK E
001: MISQREEREE KKQRVMGDKK LISSSSSSSV YDTRINHHLH HPPSSSDEIS QFLRHIFDRS SPLPSYYSPA TTTTTASLIG VHGSGDPHAD NSRSLVSHHP
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT
Arabidopsis Description
SPTSPT [Source:UniProtKB/TrEMBL;Acc:A0A178UVX7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.