CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92129
EER99751
EES03178
EES04638
EES05136
EES10652
EES17536
EES18511
EES19816
KXG28874
KXG39270
OQU78307
OQU78451
OQU82238
OQU89591

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02590.1	EES17536	AT1G22630.1	21798944
AT4G02590.1	EES18511	AT1G78680.1	21798944
AT4G02590.1	EES19816	AT1G78680.1	21798944
AT4G02590.1	OQU78307	AT1G78680.1	21798944
AT4G02590.1	EES04638	AT2G24020.1	21798944
AT4G02590.1	EES03178	AT3G28715.1	21798944
AT4G02590.1	EER99751	AT3G47640.1	21798944
AT4G02590.1	KXG28874	AT3G47640.1	21798944
AT4G02590.1	KXG39270	AT3G47640.1	21798944
AT4G02590.1	OQU89591	AT4G25315.1	21798944
AT4G02590.1	EES05136	AT5G14070.1	21798944
AT4G02590.1	EES10652	AT5G14070.1	21798944
AT4G02590.1	EER92129	AT5G15802.1	21798944
AT4G02590.1	OQU78451	AT5G15802.1	21798944
AT4G02590.1	OQU82238	AT5G45620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G449200.1	Wheat	nucleus	82.39	83.27
TraesCS5B01G445900.1	Wheat	nucleus	82.39	83.27
OQU88567	Sorghum	nucleus	79.58	81.59
TraesCS5A01G441900.1	Wheat	nucleus	78.52	79.36
HORVU5Hr1G106310.3	Barley	nucleus	82.39	75.0
GSMUA_Achr5P03100_001	Banana	nucleus	67.96	70.44
GSMUA_Achr4P21070_001	Banana	nucleus	73.59	69.67
Bra036256.1-P	Field mustard	nucleus	51.76	64.47
KRH55381	Soybean	cytosol	15.14	62.32
Bra018539.1-P	Field mustard	nucleus	51.06	57.09
KRH32094	Soybean	nucleus	56.69	56.89
VIT_05s0020g04620.t01	Wine grape	nucleus	60.92	55.27
VIT_07s0141g00220.t01	Wine grape	nucleus	55.99	55.02
KRG95612	Soybean	nucleus	55.99	54.45
CDX91293	Canola	nucleus	57.04	54.36
CDY21898	Canola	nucleus	56.69	53.49
KRH67287	Soybean	nucleus	54.93	53.42
PGSC0003DMT400049768	Potato	nucleus	56.34	52.98
Solyc09g065820.2.1	Tomato	nucleus	55.99	52.65
CDY22062	Canola	nucleus	56.34	52.63
CDY18011	Canola	nucleus	56.34	52.63
Bra000872.1-P	Field mustard	nucleus	56.69	52.1
PGSC0003DMT400034840	Potato	nucleus	54.23	52.03
AT4G02590.1	Thale cress	nucleus	56.69	51.94
CDX97278	Canola	nucleus	54.58	51.84
CDX90930	Canola	nucleus	56.34	51.61
PGSC0003DMT400015596	Potato	nucleus	54.58	51.16
VIT_14s0030g02230.t01	Wine grape	nucleus	59.51	51.06
Solyc09g083220.2.1	Tomato	nucleus	54.58	50.99
Solyc03g005350.2.1	Tomato	nucleus	52.82	50.68
CDY18143	Canola	nucleus	53.87	50.0
Bra033368.1-P	Field mustard	nucleus	53.87	49.2
CDX89919	Canola	nucleus	53.87	49.2
KRH34087	Soybean	nucleus	55.28	47.87
KRG92679	Soybean	nucleus	55.28	47.29
AT1G03040.3	Thale cress	nucleus	53.17	45.35
EES05953	Sorghum	nucleus	44.01	31.81
EER89334	Sorghum	nucleus	45.77	29.08
OQU89497	Sorghum	nucleus	46.48	28.39
EES11436	Sorghum	nucleus	14.79	22.34
KXG19523	Sorghum	nucleus	36.62	21.14
KXG30460	Sorghum	nucleus	36.62	20.55
OQU75890	Sorghum	nucleus	15.49	15.12
KXG31309	Sorghum	nucleus	14.44	14.04
OQU88421	Sorghum	nucleus	17.25	11.86
KXG23955	Sorghum	nucleus	18.31	10.95
OQU91282	Sorghum	nucleus	19.01	10.0
KXG37432	Sorghum	plastid	16.55	9.75
KXG32305	Sorghum	nucleus	19.72	9.27
OQU92150	Sorghum	nucleus	16.9	8.94
KXG21255	Sorghum	nucleus	17.96	7.41

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:8081254	UniProt:A0A1B6QHG7	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:KXG37359
ProteinID:KXG37359	ProteinID:KXG37359.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF103
SMART:SM00353	EnsemblPlantsGene:SORBI_3001G056300	SUPFAM:SSF47459	unigene:Sbi.7398	UniParc:UPI0003C6AF52	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:4224166..4228449

Molecular Weight (calculated)

30324.1 Da

IEP (calculated)

7.675

GRAVY (calculated)

-0.473

Length

284 amino acids

Sequence
(BLAST)

001: MAGQPPPQGP EDDFFDQFFS MAAGGSYPAT AGGGRAPGDQ PFSLALSLDA AAAEASGSGK HADGGKVDRE AVQLPGLFPP VFSGGVQPPH LRPNPPTQVF
101: RAQQPKQGGA GVGPQPPAPR PKVRARRGQA TDPHSIAERL RRERIAERMR ALQELVPNTN KTDRAVMLDE ILDYVKFLRL QVKVLSMSRL GGAGAVAQLV
201: ADIPLSVKGE ASDSGSKQQI WEKWSTDGTE RQVAKLMEED IGAAMQFLQS KALCMMPISL AMAIYDTQHS QDGQPVKPEP NTPS

Best Arabidopsis Sequence Match ( AT4G02590.2 )
(BLAST)

001: MASNNPHDNL SDQTPSDDFF EQILGLPNFS ASSAAGLSGV DGGLGGGAPP MMLQLGSGEE GSHMGGLGGS GPTGFHNQMF PLGLSLDQGK GPGFLRPEGG
101: HGSGKRFSDD VVDNRCSSMK PVFHGQPMQQ PPPSAPHQPT SIRPRVRARR GQATDPHSIA ERLRRERIAE RIRALQELVP TVNKTDRAAM IDEIVDYVKF
201: LRLQVKVLSM SRLGGAGAVA PLVTDMPLSS SVEDETGEGG RTPQPAWEKW SNDGTERQVA KLMEENVGAA MQLLQSKALC MMPISLAMAI YHSQPPDTSS
301: VVKPENNPPQ

Arabidopsis Description

UNE12Transcription factor UNE12 [Source:UniProtKB/Swiss-Prot;Acc:O22768]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.