Factsheet for VIT_05s0020g04620.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0182200-01	Rice	cytosol	32.91	75.74
VIT_07s0141g00220.t01	Wine grape	nucleus	65.81	71.28
GSMUA_Achr5P03100_001	Banana	nucleus	55.91	63.87
Solyc09g083220.2.1	Tomato	nucleus	61.98	63.82
VIT_14s0030g02230.t01	Wine grape	nucleus	67.41	63.75
PGSC0003DMT400034840	Potato	nucleus	59.74	63.18
Solyc03g005350.2.1	Tomato	nucleus	59.74	63.18
PGSC0003DMT400015596	Potato	nucleus	61.02	63.04
OQU88567	Sorghum	nucleus	55.59	62.82
GSMUA_Achr4P21070_001	Banana	nucleus	58.79	61.33
Zm00001d013073_P002	Maize	nucleus	55.59	61.05
KXG37359	Sorghum	nucleus	55.27	60.92
Zm00001d018967_P001	Maize	nucleus	55.27	60.7
Os03t0797600-01	Rice	nucleus	56.55	60.2
TraesCS5B01G445900.1	Wheat	nucleus	53.99	60.14
TraesCS5D01G449200.1	Wheat	nucleus	53.99	60.14
TraesCS5A01G441900.1	Wheat	nucleus	51.44	57.3
GSMUA_Achr9P25560_001	Banana	nucleus	62.3	55.24
HORVU5Hr1G106310.3	Barley	nucleus	52.72	52.88
VIT_11s0037g00040.t01	Wine grape	nucleus	47.28	29.37
VIT_07s0005g02510.t01	Wine grape	nucleus	13.42	21.0
VIT_11s0016g00380.t01	Wine grape	nucleus	34.5	20.15
VIT_18s0001g10270.t01	Wine grape	nucleus	15.65	13.28
VIT_07s0031g00450.t01	Wine grape	nucleus, plastid	16.29	12.94
VIT_17s0000g06930.t01	Wine grape	nucleus	15.65	11.58
VIT_15s0021g02690.t01	Wine grape	nucleus	16.61	11.18
VIT_12s0028g01110.t01	Wine grape	nucleus	19.17	10.75
VIT_07s0005g05100.t01	Wine grape	mitochondrion, nucleus	14.38	9.74
VIT_14s0060g00260.t01	Wine grape	nucleus	19.49	8.6

Protein Annotations

EntrezGene:100264830	wikigene:100264830	MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:CBI26351	ProteinID:CBI26351.3
UniProt:D7T780	EMBL:FN595749	GO:GO:0001046	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	EntrezGene:LOC100264830	wikigene:LOC100264830	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223
PANTHER:PTHR16223:SF15	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0001983574	ArrayExpress:VIT_05s0020g04620	EnsemblPlantsGene:VIT_05s0020g04620
EnsemblPlants:VIT_05s0020g04620.t01	unigene:Vvi.17291	RefSeq:XP_002284047	RefSeq:XP_002284047.1	InterPro:bHLH_dom	SEG:seg

Description

No Description!

Coordinates

chr5:+:6435128..6441534

Molecular Weight (calculated)

33325.6 Da

IEP (calculated)

5.821

GRAVY (calculated)

-0.308

Length

313 amino acids

Sequence
(BLAST)

001: MATNPPEGYA DDFLEQILAI PSYPGHDPNM VGTGSTMVLQ LSSGDGSGHV AGGGFQGPVF PLGLSLESGI PATQVAPGSG ERFRDDVDAR GSSGRSERES
101: VHLDGLFPAY GHVQSLSVRP AVPQVHQAFH GQPTPVPITA APHPPAIRPR VRARRGQATD PHSIAERLRR ERIAERMKAL QELVPSSNKT DRAAMLDEIV
201: DYVKFLRLQV KVLSMSRLGG AGAVAQLVAD IPLPAVEGET GEGGSNQQAW DKWSNDGTER EVAKLMEEDV GAAMQFLQSK ALCIMPISLA AAIYPAHQTD
301: TPTLIKPEPN APS

Best Arabidopsis Sequence Match ( AT4G02590.2 )
(BLAST)

001: MASNNPHDNL SDQTPSDDFF EQILGLPNFS ASSAAGLSGV DGGLGGGAPP MMLQLGSGEE GSHMGGLGGS GPTGFHNQMF PLGLSLDQGK GPGFLRPEGG
101: HGSGKRFSDD VVDNRCSSMK PVFHGQPMQQ PPPSAPHQPT SIRPRVRARR GQATDPHSIA ERLRRERIAE RIRALQELVP TVNKTDRAAM IDEIVDYVKF
201: LRLQVKVLSM SRLGGAGAVA PLVTDMPLSS SVEDETGEGG RTPQPAWEKW SNDGTERQVA KLMEENVGAA MQLLQSKALC MMPISLAMAI YHSQPPDTSS
301: VVKPENNPPQ

Arabidopsis Description

UNE12Transcription factor UNE12 [Source:UniProtKB/Swiss-Prot;Acc:O22768]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.