Factsheet for VIT_14s0030g02230.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0182200-01	Rice	cytosol	31.12	75.74
VIT_05s0020g04620.t01	Wine grape	nucleus	63.75	67.41
VIT_07s0141g00220.t01	Wine grape	nucleus	55.89	64.01
GSMUA_Achr5P03100_001	Banana	nucleus	52.87	63.87
KRH34087	Soybean	nucleus	62.54	63.11
KRG92679	Soybean	nucleus	63.14	62.95
OQU88567	Sorghum	nucleus	51.06	61.01
GSMUA_Achr4P21070_001	Banana	nucleus	54.98	60.67
TraesCS5B01G445900.1	Wheat	nucleus	51.06	60.14
TraesCS5D01G449200.1	Wheat	nucleus	51.06	60.14
Zm00001d013073_P002	Maize	nucleus	51.66	60.0
KXG37359	Sorghum	nucleus	51.06	59.51
Zm00001d018967_P001	Maize	nucleus	51.06	59.3
Os03t0797600-01	Rice	nucleus	52.27	58.84
TraesCS5A01G441900.1	Wheat	nucleus	49.85	58.72
HORVU5Hr1G106310.3	Barley	nucleus	49.55	52.56
GSMUA_Achr9P25560_001	Banana	nucleus	55.89	52.41
VIT_11s0037g00040.t01	Wine grape	nucleus	45.32	29.76
VIT_07s0005g02510.t01	Wine grape	nucleus	12.99	21.5
VIT_11s0016g00380.t01	Wine grape	nucleus	33.84	20.9
VIT_18s0001g10270.t01	Wine grape	nucleus	14.8	13.28
VIT_07s0031g00450.t01	Wine grape	nucleus, plastid	15.41	12.94
VIT_17s0000g06930.t01	Wine grape	nucleus	15.11	11.82
VIT_12s0028g01110.t01	Wine grape	nucleus	18.43	10.93
VIT_15s0021g02690.t01	Wine grape	nucleus	14.8	10.54
VIT_07s0005g05100.t01	Wine grape	mitochondrion, nucleus	14.2	10.17
VIT_14s0060g00260.t01	Wine grape	nucleus	18.73	8.74

Protein Annotations

EntrezGene:100262267	wikigene:100262267	MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:CCB58071	ProteinID:CCB58071.1
UniProt:F6HTR0	EMBL:FN596249	GO:GO:0001046	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	EntrezGene:LOC100262267	wikigene:LOC100262267	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223
PANTHER:PTHR16223:SF15	SMART:SM00353	SUPFAM:SSF47459	TIGR:TC58385	UniParc:UPI00021096D8	ArrayExpress:VIT_14s0030g02230
EnsemblPlantsGene:VIT_14s0030g02230	EnsemblPlants:VIT_14s0030g02230.t01	RefSeq:XP_002274833	RefSeq:XP_002274833.2	RefSeq:XP_010659880.1	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr14:+:7430438..7436403

Molecular Weight (calculated)

34504.7 Da

IEP (calculated)

6.238

GRAVY (calculated)

-0.350

Length

331 amino acids

Sequence
(BLAST)

001: MANNNNNSNN PHEGLADDFF EQILAVPSYS DPAFGAHDGN LALASGGGGG GGGGGGGGGG GAASGYMSMG MGMPLGLNLE HGFLKARDQS GATNNAAAAA
101: SSSCGITERE SVHLTNLFPA FGQLQPQSLR PSPPAPAPPP PHLPQPFHGQ PTSSAVAAQP HPPAIRPRVR ARRGQATDPH SIAERLRRER IAERMKALQE
201: LVPSANKTDR AAMLDEIVDY VKFLRLQVKV LSMSRLGGAG AVAQLVADVP LLSIEGDGTE GGSNQQAWEK WSTDGTEQQV AKLMEEDVGA AMQFLQSKAL
301: CIMPISLASA IFRTHQPEPS TLVKPESDAP S

Best Arabidopsis Sequence Match ( AT4G02590.3 )
(BLAST)

001: MGGLGGSGPT GFHNQMFPLG LSLDQGKGPG FLRPEGGHGS GKRFSDDVVD NRCSSMKPVF HGQPMQQPPP SAPHQPTSIR PRVRARRGQA TDPHSIAERL
101: RRERIAERIR ALQELVPTVN KTDRAAMIDE IVDYVKFLRL QVKVLSMSRL GGAGAVAPLV TDMPLSSSVE DETGEGGRTP QPAWEKWSND GTERQVAKLM
201: EENVGAAMQL LQSKALCMMP ISLAMAIYHS QPPDTSSVVK PENNPPQ

Arabidopsis Description

UNE12Transcription factor UNE12 [Source:UniProtKB/Swiss-Prot;Acc:O22768]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.