Factsheet for VIT_17s0000g06930.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063117	Potato	nucleus	54.14	52.4
Solyc03g115540.1.1	Tomato	nucleus	54.14	52.16
KRH54630	Soybean	nucleus	46.34	48.76
PGSC0003DMT400083164	Potato	nucleus	45.86	46.63
Solyc06g069600.1.1	Tomato	nucleus	45.39	46.38
VIT_15s0021g02690.t01	Wine grape	nucleus	42.55	38.71
VIT_07s0005g02510.t01	Wine grape	nucleus	13.71	29.0
VIT_07s0031g00450.t01	Wine grape	nucleus, plastid	20.33	21.83
VIT_18s0001g10270.t01	Wine grape	nucleus	17.49	20.05
VIT_07s0005g05100.t01	Wine grape	mitochondrion, nucleus	20.57	18.83
VIT_12s0028g01110.t01	Wine grape	nucleus	24.11	18.28
VIT_05s0020g04620.t01	Wine grape	nucleus	11.58	15.65
VIT_14s0060g00260.t01	Wine grape	nucleus	25.53	15.23
VIT_07s0141g00220.t01	Wine grape	nucleus	10.4	15.22
VIT_14s0030g02230.t01	Wine grape	nucleus	11.82	15.11
VIT_11s0037g00040.t01	Wine grape	nucleus	13.95	11.71
VIT_11s0016g00380.t01	Wine grape	nucleus	13.48	10.63

Protein Annotations

EntrezGene:100262138	wikigene:100262138	MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:CCB43051	ProteinID:CCB43051.1
ncoils:Coil	UniProt:F6GT27	EMBL:FN594950	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100262138	wikigene:LOC100262138
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF285	SMART:SM00353	SUPFAM:SSF47459
TIGR:TC54391	UniParc:UPI00019851EC	ArrayExpress:VIT_17s0000g06930	EnsemblPlantsGene:VIT_17s0000g06930	EnsemblPlants:VIT_17s0000g06930.t01	unigene:Vvi.6996
RefSeq:XP_002284441	RefSeq:XP_002284441.1	InterPro:bHLH_dom	SEG:seg	:	:

Description

No Description!

Coordinates

chr17:+:7609556..7613137

Molecular Weight (calculated)

46634.3 Da

IEP (calculated)

8.881

GRAVY (calculated)

-0.708

Length

423 amino acids

Sequence
(BLAST)

001: MSSQCIVPNW NLRHQRQEQV EGEEGNRSSH VHTHQKNSSH IVPMSNYEVA ELTWENGQLA MHGLGGLLPT APTKPTWGRA GDTLESIVHQ ATCHNQNSNF
101: IHHAQNLANM KSTVGSSAHV QTGNQGLMKK RTRSDSAHCG RNFSTNVHEA ERADRSACAS ASATFCRDNE TTMMTWPSSE SPRSLKAKTT DEDSACHGGS
201: ENQDEDRETK TQTGRSHSTR RSRAAAIHNQ SERRRRDRIN QKMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVQMMS VRNMPQMMMP MGMQQQLQMS
301: LLARMGMGVG LGMGMGMLDM SAVPRAAPQT LPSLLHANPV VAATPTFVPP PFVVPPMMPS SSQPKSDAGA NAAVPLQDPY CAFLAQSMNM DLYHKMAALY
401: RQHVNHKAQP TSSPPHSNHD LGD

Best Arabidopsis Sequence Match ( AT4G00050.1 )
(BLAST)

001: MSQCVPNCHI DDTPAAATTT VRSTTAADIP ILDYEVAELT WENGQLGLHG LGPPRVTASS TKYSTGAGGT LESIVDQATR LPNPKPTDEL VPWFHHRSSR
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK

Arabidopsis Description

UNE10Transcription factor UNE10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ38]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.