Factsheet for VIT_14s0060g00260.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g02510.t01	Wine grape	nucleus	15.09	53.5
Zm00001d040536_P005	Maize	nucleus	28.35	35.45
KXG32305	Sorghum	nucleus	28.63	33.61
Zm00001d024783_P001	Maize	nucleus	22.99	32.28
Os05t0139100-01	Rice	nucleus	22.85	32.08
Os01t0286100-01	Rice	nucleus	28.77	32.03
TraesCS1A01G083000.1	Wheat	nucleus	22.85	31.95
HORVU1Hr1G017900.1	Barley	nucleus	21.86	31.44
TraesCS1B01G100400.2	Wheat	nucleus	22.14	31.27
TraesCS1D01G084200.1	Wheat	nucleus	21.86	30.88
Zm00001d008205_P001	Maize	nucleus	26.94	29.94
VIT_07s0005g05100.t01	Wine grape	mitochondrion, nucleus	18.76	28.79
VIT_18s0001g10270.t01	Wine grape	nucleus	14.53	27.91
VIT_12s0028g01110.t01	Wine grape	nucleus	21.44	27.24
VIT_07s0031g00450.t01	Wine grape	nucleus, plastid	14.67	26.4
VIT_17s0000g06930.t01	Wine grape	nucleus	15.23	25.53
KXG21255	Sorghum	nucleus	23.27	23.98
VIT_15s0021g02690.t01	Wine grape	nucleus	14.95	22.8
VIT_07s0141g00220.t01	Wine grape	nucleus	8.18	20.07
VIT_05s0020g04620.t01	Wine grape	nucleus	8.6	19.49
VIT_14s0030g02230.t01	Wine grape	nucleus	8.74	18.73
VIT_11s0037g00040.t01	Wine grape	nucleus	11.28	15.87
VIT_11s0016g00380.t01	Wine grape	nucleus	10.72	14.18

Protein Annotations

EntrezGene:100247781	wikigene:100247781	MapMan:15.5.32	MapMan:26.1.1.4	Gene3D:4.10.280.10	EMBL:AM441676
ProteinID:CAN76246	ProteinID:CAN76246.1	ProteinID:CCB61970	ProteinID:CCB61970.1	UniProt:F6I4I6	EMBL:FN596746
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	EntrezGene:LOC100247781	wikigene:LOC100247781	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF284	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000210A8B3	ArrayExpress:VIT_14s0060g00260	EnsemblPlantsGene:VIT_14s0060g00260
EnsemblPlants:VIT_14s0060g00260.t01	unigene:Vvi.10431	RefSeq:XP_002276198	RefSeq:XP_002276198.2	RefSeq:XP_010659764.1	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr14:-:262245..267480

Molecular Weight (calculated)

75865.5 Da

IEP (calculated)

6.756

GRAVY (calculated)

-0.598

Length

709 amino acids

Sequence
(BLAST)

001: MPFSELYRMA KGKPESVQQK TNDLSFGPEN DFVELVWEGG QIMMQGQSSR ARKSPLSNSF PSHTPKPRDK DTGHGTNSKM GKFGSMDFIL NDFPLSVPSA
101: EMGLSQDDDM VPWLNYPIDE SLQHDYCSDF LQELSGVTVN ELSTHCNFAS GEKRNSNNQT IKDSNTISAH NGVSLEQGNA SKASAAGVEP SRPRSSQLYP
201: PSSQQCQTLF PSMRSKVSDP ISNNTSNAMH HTVSGNSIRL PASTSGFSST KTQKQDPGQT RNNSGLMNFS HFSRPAALVK ANLQNIGAIA GPSSSSKDRI
301: GSKDKQPAAS SRNPAESRHV DSSCGLQKDV DSHSEPVMVP ASVDLKPVVA KTMEEPLPAE QSPVICQEGA CKNEKSSNQV LGARTAKGIP DGEKTIEPAV
401: ACSSVCSGNS VERASNDPKH NLKRKCRDTE ESECPSEDVE EESVGVRKSA PAKGGTGSKR SRAAEVHNLS ERRRRDRINE KMRALQELIP NCNKVDKASM
501: LDEAIEYLKT LQLQVQIMSM GTGLCMPPMM LPTGMQHIHA AHMGHFPPMG VGMGMGMGMG YGMGMLDMNG GSPSCPFIQA PPMQGTHFPG RPISVPPNLH
601: GMVGSNLQVF GLPGQGIPLS MPHAPLIPMS GSPLMKSSMA LNDSGAAGSM EVPDSAPASS SKDLIQNVNS QVMQNNDANS SMASSQCQEQ SALVQKNDQA
701: PDVSHGEGV

Best Arabidopsis Sequence Match ( AT1G09530.3 )
(BLAST)

001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS

Arabidopsis Description

PIF3Transcription factor PIF3 [Source:UniProtKB/Swiss-Prot;Acc:O80536]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.